miRNA display CGI

Results 41 - 60 of 975 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21390	3'	-65.8	NC_004812.1	+	110138	0.66	0.488979
	Target:  5'- aGGaCGAcgacgaccCGGACGCGGaGGCCcuggcccgcgGGGGUGu -3' miRNA:   3'- aCC-GCU--------GCCUGUGCCgCCGG----------CCCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	43893	0.66	0.497872
	Target:  5'- aGGCGGCGcAgGgGGagaagGGuCCGGGGCGu -3' miRNA:   3'- aCCGCUGCcUgUgCCg----CC-GGCCCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	28488	0.66	0.506836
	Target:  5'- cGGCGGCGGGCGgGGaaag-GGGGCu -3' miRNA:   3'- aCCGCUGCCUGUgCCgccggCCCCGc -5'
21390	3'	-65.8	NC_004812.1	+	43066	0.66	0.506836
	Target:  5'- gGGUG-CGGGgGCGGUGGgggugCGGGGaCGa -3' miRNA:   3'- aCCGCuGCCUgUGCCGCCg----GCCCC-GC- -5'
21390	3'	-65.8	NC_004812.1	+	148730	0.66	0.506836
	Target:  5'- gGGCGAgGGguGCGCGGgGGagggGaGGGCGa -3' miRNA:   3'- aCCGCUgCC--UGUGCCgCCgg--C-CCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	57954	0.66	0.528621
	Target:  5'- cGGCGuGCGGuuucccaggcucuuCACGGCGGCCacgaacacGGCGc -3' miRNA:   3'- aCCGC-UGCCu-------------GUGCCGCCGGcc------CCGC- -5'
21390	3'	-65.8	NC_004812.1	+	136171	0.66	0.506836
	Target:  5'- gGGuUGGCGucCGCGGaCGuCCGGGGCa -3' miRNA:   3'- aCC-GCUGCcuGUGCC-GCcGGCCCCGc -5'
21390	3'	-65.8	NC_004812.1	+	156020	0.66	0.515868
	Target:  5'- aGGgGACgcccgGGGC-CGGgGGCCGcgccgcgggacGGGCGg -3' miRNA:   3'- aCCgCUG-----CCUGuGCCgCCGGC-----------CCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	1087	0.66	0.504139
	Target:  5'- cGGCcGCGGucuccuccuGCcCGGCGGCCcgggucgcuucgccGGGGCc -3' miRNA:   3'- aCCGcUGCC---------UGuGCCGCCGG--------------CCCCGc -5'
21390	3'	-65.8	NC_004812.1	+	107836	0.66	0.515868
	Target:  5'- cGGUGAgGGccuCGCGGaGG-CGGGGCu -3' miRNA:   3'- aCCGCUgCCu--GUGCCgCCgGCCCCGc -5'
21390	3'	-65.8	NC_004812.1	+	137343	0.66	0.488979
	Target:  5'- aGGUGACGGcgcucGCcCGGCaGCUGcuGGGCGc -3' miRNA:   3'- aCCGCUGCC-----UGuGCCGcCGGC--CCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	90148	0.66	0.515868
	Target:  5'- -cGCGuccUGGACGCGGCGGCCcuGGaCGc -3' miRNA:   3'- acCGCu--GCCUGUGCCGCCGGccCC-GC- -5'
21390	3'	-65.8	NC_004812.1	+	130366	0.66	0.497872
	Target:  5'- cGGCGGCGcGGC-CGugaaGCGGCCcGuGGCGu -3' miRNA:   3'- aCCGCUGC-CUGuGC----CGCCGGcC-CCGC- -5'
21390	3'	-65.8	NC_004812.1	+	51540	0.66	0.488979
	Target:  5'- cGGCGcCGGggggccaguguGCGCccGCGGCCGGaGCGg -3' miRNA:   3'- aCCGCuGCC-----------UGUGc-CGCCGGCCcCGC- -5'
21390	3'	-65.8	NC_004812.1	+	7272	0.66	0.497872
	Target:  5'- cGGgGA-GGGgGCGGCGGCCGcGuGUGa -3' miRNA:   3'- aCCgCUgCCUgUGCCGCCGGCcC-CGC- -5'
21390	3'	-65.8	NC_004812.1	+	148782	0.66	0.506836
	Target:  5'- gGGCGAgGGguGCGCGGgGGagggGaGGGCGa -3' miRNA:   3'- aCCGCUgCC--UGUGCCgCCgg--C-CCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	148549	0.66	0.506836
	Target:  5'- gGGCGAgGGguGCGCGGgGGagggGaGGGCGa -3' miRNA:   3'- aCCGCUgCC--UGUGCCgCCgg--C-CCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	136366	0.66	0.514962
	Target:  5'- cGGCGGgacccaaGGuCcCGGCGGCCGcgcuagccguugcGGGCGc -3' miRNA:   3'- aCCGCUg------CCuGuGCCGCCGGC-------------CCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	82090	0.66	0.506836
	Target:  5'- gGGCG-CGuGGCcCGGCuGGCCGGcGGaCa -3' miRNA:   3'- aCCGCuGC-CUGuGCCG-CCGGCC-CC-Gc -5'
21390	3'	-65.8	NC_004812.1	+	69594	0.66	0.497872
	Target:  5'- aGcGCGACGG---CGGUGGCCcGcGGGUGg -3' miRNA:   3'- aC-CGCUGCCuguGCCGCCGG-C-CCCGC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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