miRNA display CGI

Results 21 - 40 of 975 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21390	3'	-65.8	NC_004812.1	+	112363	0.66	0.488979
	Target:  5'- cGGCGAucgcgcucugcCGGACucGCGGCGGCCacacGCGu -3' miRNA:   3'- aCCGCU-----------GCCUG--UGCCGCCGGccc-CGC- -5'
21390	3'	-65.8	NC_004812.1	+	148730	0.66	0.506836
	Target:  5'- gGGCGAgGGguGCGCGGgGGagggGaGGGCGa -3' miRNA:   3'- aCCGCUgCC--UGUGCCgCCgg--C-CCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	7272	0.66	0.497872
	Target:  5'- cGGgGA-GGGgGCGGCGGCCGcGuGUGa -3' miRNA:   3'- aCCgCUgCCUgUGCCGCCGGCcC-CGC- -5'
21390	3'	-65.8	NC_004812.1	+	130923	0.66	0.497872
	Target:  5'- cGGCcccGCGGACgACGGCGGggacagcgcCCGGGcCGu -3' miRNA:   3'- aCCGc--UGCCUG-UGCCGCC---------GGCCCcGC- -5'
21390	3'	-65.8	NC_004812.1	+	110138	0.66	0.488979
	Target:  5'- aGGaCGAcgacgaccCGGACGCGGaGGCCcuggcccgcgGGGGUGu -3' miRNA:   3'- aCC-GCU--------GCCUGUGCCgCCGG----------CCCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	48288	0.66	0.488979
	Target:  5'- cUGGaGACGGcCGCGGCGGUggccgaGGaGGCc -3' miRNA:   3'- -ACCgCUGCCuGUGCCGCCGg-----CC-CCGc -5'
21390	3'	-65.8	NC_004812.1	+	136171	0.66	0.506836
	Target:  5'- gGGuUGGCGucCGCGGaCGuCCGGGGCa -3' miRNA:   3'- aCC-GCUGCcuGUGCC-GCcGGCCCCGc -5'
21390	3'	-65.8	NC_004812.1	+	1087	0.66	0.504139
	Target:  5'- cGGCcGCGGucuccuccuGCcCGGCGGCCcgggucgcuucgccGGGGCc -3' miRNA:   3'- aCCGcUGCC---------UGuGCCGCCGG--------------CCCCGc -5'
21390	3'	-65.8	NC_004812.1	+	34709	0.66	0.492527
	Target:  5'- aGGCGACGaGCGCcucguacaccGGCaGCCgccgaucgccguccuGGGGCGg -3' miRNA:   3'- aCCGCUGCcUGUG----------CCGcCGG---------------CCCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	45171	0.66	0.515868
	Target:  5'- gGGUuccaGACGGGCGCGuGCgucacccaGGCCcGGGaGCGc -3' miRNA:   3'- aCCG----CUGCCUGUGC-CG--------CCGG-CCC-CGC- -5'
21390	3'	-65.8	NC_004812.1	+	43893	0.66	0.497872
	Target:  5'- aGGCGGCGcAgGgGGagaagGGuCCGGGGCGu -3' miRNA:   3'- aCCGCUGCcUgUgCCg----CC-GGCCCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	103505	0.66	0.485443
	Target:  5'- -cGCGACGGccGCGCGGagcaucuccugcaGGUCccuGGGGCGg -3' miRNA:   3'- acCGCUGCC--UGUGCCg------------CCGG---CCCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	148782	0.66	0.506836
	Target:  5'- gGGCGAgGGguGCGCGGgGGagggGaGGGCGa -3' miRNA:   3'- aCCGCUgCC--UGUGCCgCCgg--C-CCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	22105	0.66	0.506836
	Target:  5'- cGGUGGCGucCAUGGCGaugauCCGgGGGCa -3' miRNA:   3'- aCCGCUGCcuGUGCCGCc----GGC-CCCGc -5'
21390	3'	-65.8	NC_004812.1	+	121315	0.66	0.488094
	Target:  5'- cGGCGGgaccaccCGGGCgACGccuCGGCCaGGGCGc -3' miRNA:   3'- aCCGCU-------GCCUG-UGCc--GCCGGcCCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	136366	0.66	0.514962
	Target:  5'- cGGCGGgacccaaGGuCcCGGCGGCCGcgcuagccguugcGGGCGc -3' miRNA:   3'- aCCGCUg------CCuGuGCCGCCGGC-------------CCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	51540	0.66	0.488979
	Target:  5'- cGGCGcCGGggggccaguguGCGCccGCGGCCGGaGCGg -3' miRNA:   3'- aCCGCuGCC-----------UGUGc-CGCCGGCCcCGC- -5'
21390	3'	-65.8	NC_004812.1	+	148601	0.66	0.506836
	Target:  5'- gGGCGAgGGguGCGCGGgGGagggGaGGGCGa -3' miRNA:   3'- aCCGCUgCC--UGUGCCgCCgg--C-CCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	130805	0.66	0.480162
	Target:  5'- cGGCGAccuCGGcgagcucCGCGaGCGcgucguccGCCGGGGCGc -3' miRNA:   3'- aCCGCU---GCCu------GUGC-CGC--------CGGCCCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	25740	0.66	0.497872
	Target:  5'- gGGCGAgaaACACGGCccCCGGGGCc -3' miRNA:   3'- aCCGCUgccUGUGCCGccGGCCCCGc -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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