Results 21 - 40 of 975 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21390 | 3' | -65.8 | NC_004812.1 | + | 100136 | 0.81 | 0.057591 |
Target: 5'- aGGCGugGcGGCGCgGGCGG-CGGGGCGg -3' miRNA: 3'- aCCGCugC-CUGUG-CCGCCgGCCCCGC- -5' |
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21390 | 3' | -65.8 | NC_004812.1 | + | 91149 | 0.8 | 0.059052 |
Target: 5'- cGGgGACGGGCGgucCGGgGGCCGGGGgGa -3' miRNA: 3'- aCCgCUGCCUGU---GCCgCCGGCCCCgC- -5' |
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21390 | 3' | -65.8 | NC_004812.1 | + | 119480 | 0.8 | 0.059052 |
Target: 5'- cGGCcGCGGGgcCGCGGCGGCaGGGGCGg -3' miRNA: 3'- aCCGcUGCCU--GUGCCGCCGgCCCCGC- -5' |
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21390 | 3' | -65.8 | NC_004812.1 | + | 94385 | 0.8 | 0.059052 |
Target: 5'- cUGGCGGCGGcguACGCGGCGGC-GGuGGCGu -3' miRNA: 3'- -ACCGCUGCC---UGUGCCGCCGgCC-CCGC- -5' |
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21390 | 3' | -65.8 | NC_004812.1 | + | 11605 | 0.8 | 0.059052 |
Target: 5'- cGGCgGGCGGGCuCGGCGuGCCGGGaGCGu -3' miRNA: 3'- aCCG-CUGCCUGuGCCGC-CGGCCC-CGC- -5' |
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21390 | 3' | -65.8 | NC_004812.1 | + | 150381 | 0.8 | 0.059052 |
Target: 5'- cGGCcGCGGGgcCGCGGCGGCaGGGGCGg -3' miRNA: 3'- aCCGcUGCCU--GUGCCGCCGgCCCCGC- -5' |
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21390 | 3' | -65.8 | NC_004812.1 | + | 68087 | 0.8 | 0.060549 |
Target: 5'- cGGCaGACGaGACACgGGCGGUCGaGGGCGa -3' miRNA: 3'- aCCG-CUGC-CUGUG-CCGCCGGC-CCCGC- -5' |
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21390 | 3' | -65.8 | NC_004812.1 | + | 105496 | 0.8 | 0.063652 |
Target: 5'- aGGCGAcCGGGCcCGGCGGCCGaguGGGUGu -3' miRNA: 3'- aCCGCU-GCCUGuGCCGCCGGC---CCCGC- -5' |
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21390 | 3' | -65.8 | NC_004812.1 | + | 70261 | 0.8 | 0.064291 |
Target: 5'- gGGUGGCGGAuCGCGGUGGggggcaacucguuguCCGGGGCGu -3' miRNA: 3'- aCCGCUGCCU-GUGCCGCC---------------GGCCCCGC- -5' |
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21390 | 3' | -65.8 | NC_004812.1 | + | 139300 | 0.8 | 0.065261 |
Target: 5'- gGGCGA-GG-UGCGGCGGCCGaGGGCGg -3' miRNA: 3'- aCCGCUgCCuGUGCCGCCGGC-CCCGC- -5' |
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21390 | 3' | -65.8 | NC_004812.1 | + | 4954 | 0.8 | 0.066909 |
Target: 5'- gGGCGGCcGGCG-GGCGGCCGGcGGCGg -3' miRNA: 3'- aCCGCUGcCUGUgCCGCCGGCC-CCGC- -5' |
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21390 | 3' | -65.8 | NC_004812.1 | + | 71819 | 0.8 | 0.066909 |
Target: 5'- gUGGUGGCGGAagggggagggUGCGGCGGCCG-GGCGg -3' miRNA: 3'- -ACCGCUGCCU----------GUGCCGCCGGCcCCGC- -5' |
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21390 | 3' | -65.8 | NC_004812.1 | + | 130462 | 0.8 | 0.066909 |
Target: 5'- gGGCGGCcGGCG-GGCGGCCGGcGGCGg -3' miRNA: 3'- aCCGCUGcCUGUgCCGCCGGCC-CCGC- -5' |
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21390 | 3' | -65.8 | NC_004812.1 | + | 46902 | 0.79 | 0.068597 |
Target: 5'- cGG-GGCGGGCGCGGCGGCCGccgccgcGGCGg -3' miRNA: 3'- aCCgCUGCCUGUGCCGCCGGCc------CCGC- -5' |
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21390 | 3' | -65.8 | NC_004812.1 | + | 105166 | 0.79 | 0.070327 |
Target: 5'- uUGGCGGgGGuCGCGuGCGGCUGGuGGCGg -3' miRNA: 3'- -ACCGCUgCCuGUGC-CGCCGGCC-CCGC- -5' |
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21390 | 3' | -65.8 | NC_004812.1 | + | 30224 | 0.79 | 0.070327 |
Target: 5'- gGGUGGgGGGCGCGcGCGGgCGGGGCu -3' miRNA: 3'- aCCGCUgCCUGUGC-CGCCgGCCCCGc -5' |
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21390 | 3' | -65.8 | NC_004812.1 | + | 38523 | 0.79 | 0.070327 |
Target: 5'- -cGCGcCGGagacGCGCGGCGGCCGGGGuCGg -3' miRNA: 3'- acCGCuGCC----UGUGCCGCCGGCCCC-GC- -5' |
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21390 | 3' | -65.8 | NC_004812.1 | + | 7622 | 0.79 | 0.070327 |
Target: 5'- -cGCGcCGGagacGCGCGGCGGCCGGGGuCGg -3' miRNA: 3'- acCGCuGCC----UGUGCCGCCGGCCCC-GC- -5' |
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21390 | 3' | -65.8 | NC_004812.1 | + | 155732 | 0.79 | 0.070327 |
Target: 5'- gGGUGGgGGGCGCGcGCGGgCGGGGCu -3' miRNA: 3'- aCCGCUgCCUGUGC-CGCCgGCCCCGc -5' |
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21390 | 3' | -65.8 | NC_004812.1 | + | 98382 | 0.79 | 0.072098 |
Target: 5'- gGGUccucgGGCGG-CGCGGCGGCCgcGGGGCGg -3' miRNA: 3'- aCCG-----CUGCCuGUGCCGCCGG--CCCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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