miRNA display CGI

Results 1 - 20 of 975 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21390	3'	-65.8	NC_004812.1	+	133237	1.08	0.00054
	Target:  5'- gUGGCGACGGACACGGCGGCCGGGGCGg -3' miRNA:   3'- -ACCGCUGCCUGUGCCGCCGGCCCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	114497	0.88	0.015776
	Target:  5'- gGGCGGCGGGCgACGGCGGacuCCGGGGCGc -3' miRNA:   3'- aCCGCUGCCUG-UGCCGCC---GGCCCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	15963	0.87	0.018394
	Target:  5'- gGGCGACGGACGCcccGCGGCCGGcGGCGc -3' miRNA:   3'- aCCGCUGCCUGUGc--CGCCGGCC-CCGC- -5'
21390	3'	-65.8	NC_004812.1	+	3900	0.87	0.019861
	Target:  5'- aGGCG-CGGGCGCGGCGGCgCGGcGGCGg -3' miRNA:   3'- aCCGCuGCCUGUGCCGCCG-GCC-CCGC- -5'
21390	3'	-65.8	NC_004812.1	+	129408	0.87	0.019861
	Target:  5'- aGGCG-CGGGCGCGGCGGCgCGGcGGCGg -3' miRNA:   3'- aCCGCuGCCUGUGCCGCCG-GCC-CCGC- -5'
21390	3'	-65.8	NC_004812.1	+	40084	0.86	0.022566
	Target:  5'- gGGCGGCGGGCgGCgGGCGGCCGGGcGCGc -3' miRNA:   3'- aCCGCUGCCUG-UG-CCGCCGGCCC-CGC- -5'
21390	3'	-65.8	NC_004812.1	+	109149	0.85	0.027669
	Target:  5'- cGGCGACGGAC-CGGCcgucgGGCCuGGGGCGg -3' miRNA:   3'- aCCGCUGCCUGuGCCG-----CCGG-CCCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	155818	0.85	0.027669
	Target:  5'- cGGCGGCGGGgGCGGCGGCCcaucucccgcGGGGCc -3' miRNA:   3'- aCCGCUGCCUgUGCCGCCGG----------CCCCGc -5'
21390	3'	-65.8	NC_004812.1	+	124917	0.85	0.027669
	Target:  5'- cGGCGGCGGGgGCGGCGGCCcaucucccgcGGGGCc -3' miRNA:   3'- aCCGCUGCCUgUGCCGCCGG----------CCCCGc -5'
21390	3'	-65.8	NC_004812.1	+	79435	0.84	0.029863
	Target:  5'- cGGCGGCGGGgACGGCGccGCCGcGGGCGg -3' miRNA:   3'- aCCGCUGCCUgUGCCGC--CGGC-CCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	82991	0.83	0.038487
	Target:  5'- cGGCGugGGAgACGG-GcGCCGGGGCGa -3' miRNA:   3'- aCCGCugCCUgUGCCgC-CGGCCCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	146191	0.83	0.039473
	Target:  5'- -cGCGGUGGACGCGGgGGUCGGGGCGg -3' miRNA:   3'- acCGCUGCCUGUGCCgCCGGCCCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	88223	0.83	0.039473
	Target:  5'- cGGaCGGCGG-CugGGCGGCgGGGGCGu -3' miRNA:   3'- aCC-GCUGCCuGugCCGCCGgCCCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	109686	0.82	0.045242
	Target:  5'- cGGCGGCGGAUguguccgccgcgGCGGCGGCCgccgcgcccgaccccGGGGCGc -3' miRNA:   3'- aCCGCUGCCUG------------UGCCGCCGG---------------CCCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	148930	0.82	0.048305
	Target:  5'- cGGCGGCGucggcGACgACGGUGGUCGGGGCGc -3' miRNA:   3'- aCCGCUGC-----CUG-UGCCGCCGGCCCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	23422	0.82	0.048305
	Target:  5'- cGGCGGCGucggcGACgACGGUGGUCGGGGCGc -3' miRNA:   3'- aCCGCUGC-----CUG-UGCCGCCGGCCCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	152740	0.81	0.053417
	Target:  5'- gGGCGcuuGCGGGcCGCGGCGGCCGcGGCGa -3' miRNA:   3'- aCCGC---UGCCU-GUGCCGCCGGCcCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	121839	0.81	0.053417
	Target:  5'- gGGCGcuuGCGGGcCGCGGCGGCCGcGGCGa -3' miRNA:   3'- aCCGC---UGCCU-GUGCCGCCGGCcCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	91507	0.81	0.053417
	Target:  5'- uUGGCGGCcGAgcCGGCGGCCGGGGCc -3' miRNA:   3'- -ACCGCUGcCUguGCCGCCGGCCCCGc -5'
21390	3'	-65.8	NC_004812.1	+	24801	0.81	0.053417
	Target:  5'- gGGCGACGGGCACGGCcuGGUC-GGGCa -3' miRNA:   3'- aCCGCUGCCUGUGCCG--CCGGcCCCGc -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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