miRNA display CGI

Results 1 - 20 of 975 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
21390	3'	-65.8	NC_004812.1	+	35222	0.65	0.531369
	Target:  5'- aUGGaGACGGGCGacauCGG-GGCCuacguggugcucguGGGGCGc -3' miRNA:   3'- -ACCgCUGCCUGU----GCCgCCGG--------------CCCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	4321	0.65	0.531369
	Target:  5'- aUGGaGACGGGCGacauCGG-GGCCuacguggugcucguGGGGCGc -3' miRNA:   3'- -ACCgCUGCCUGU----GCCgCCGG--------------CCCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	15371	0.65	0.531369
	Target:  5'- -aGCGACcacgcccuccccagGGACcUGGCgaccguGGCCGGGGCc -3' miRNA:   3'- acCGCUG--------------CCUGuGCCG------CCGGCCCCGc -5'
21390	3'	-65.8	NC_004812.1	+	130805	0.66	0.480162
	Target:  5'- cGGCGAccuCGGcgagcucCGCGaGCGcgucguccGCCGGGGCGc -3' miRNA:   3'- aCCGCU---GCCu------GUGC-CGC--------CGGCCCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	83793	0.66	0.488979
	Target:  5'- cGGCccguCGGugG-GGUGaCCGGGGCGg -3' miRNA:   3'- aCCGcu--GCCugUgCCGCcGGCCCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	110730	0.66	0.488094
	Target:  5'- cGGCaGGCGGGagacccuCGCGGaGGUCuuGGGGCGu -3' miRNA:   3'- aCCG-CUGCCU-------GUGCCgCCGG--CCCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	137343	0.66	0.488979
	Target:  5'- aGGUGACGGcgcucGCcCGGCaGCUGcuGGGCGc -3' miRNA:   3'- aCCGCUGCC-----UGuGCCGcCGGC--CCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	34709	0.66	0.492527
	Target:  5'- aGGCGACGaGCGCcucguacaccGGCaGCCgccgaucgccguccuGGGGCGg -3' miRNA:   3'- aCCGCUGCcUGUG----------CCGcCGG---------------CCCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	51540	0.66	0.488979
	Target:  5'- cGGCGcCGGggggccaguguGCGCccGCGGCCGGaGCGg -3' miRNA:   3'- aCCGCuGCC-----------UGUGc-CGCCGGCCcCGC- -5'
21390	3'	-65.8	NC_004812.1	+	43893	0.66	0.497872
	Target:  5'- aGGCGGCGcAgGgGGagaagGGuCCGGGGCGu -3' miRNA:   3'- aCCGCUGCcUgUgCCg----CC-GGCCCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	25740	0.66	0.497872
	Target:  5'- gGGCGAgaaACACGGCccCCGGGGCc -3' miRNA:   3'- aCCGCUgccUGUGCCGccGGCCCCGc -5'
21390	3'	-65.8	NC_004812.1	+	103505	0.66	0.485443
	Target:  5'- -cGCGACGGccGCGCGGagcaucuccugcaGGUCccuGGGGCGg -3' miRNA:   3'- acCGCUGCC--UGUGCCg------------CCGG---CCCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	8390	0.66	0.488979
	Target:  5'- cGGgGucCGGGgGC-GCGGCgGGGGCu -3' miRNA:   3'- aCCgCu-GCCUgUGcCGCCGgCCCCGc -5'
21390	3'	-65.8	NC_004812.1	+	104046	0.66	0.496979
	Target:  5'- cGGCGuCGGggaGCuCGGCGGUgccggucggacgaCGGGGgGg -3' miRNA:   3'- aCCGCuGCC---UGuGCCGCCG-------------GCCCCgC- -5'
21390	3'	-65.8	NC_004812.1	+	48288	0.66	0.488979
	Target:  5'- cUGGaGACGGcCGCGGCGGUggccgaGGaGGCc -3' miRNA:   3'- -ACCgCUGCCuGUGCCGCCGg-----CC-CCGc -5'
21390	3'	-65.8	NC_004812.1	+	97721	0.66	0.488979
	Target:  5'- gUGGaUGGgGGACAgCGGCGGCaagcuGGGGa- -3' miRNA:   3'- -ACC-GCUgCCUGU-GCCGCCGg----CCCCgc -5'
21390	3'	-65.8	NC_004812.1	+	121315	0.66	0.488094
	Target:  5'- cGGCGGgaccaccCGGGCgACGccuCGGCCaGGGCGc -3' miRNA:   3'- aCCGCU-------GCCUG-UGCc--GCCGGcCCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	50623	0.66	0.480162
	Target:  5'- aGGCGAgcgagaaguuCGGGCuguGGgGGgCGGGGCc -3' miRNA:   3'- aCCGCU----------GCCUGug-CCgCCgGCCCCGc -5'
21390	3'	-65.8	NC_004812.1	+	69594	0.66	0.497872
	Target:  5'- aGcGCGACGG---CGGUGGCCcGcGGGUGg -3' miRNA:   3'- aC-CGCUGCCuguGCCGCCGG-C-CCCGC- -5'
21390	3'	-65.8	NC_004812.1	+	112363	0.66	0.488979
	Target:  5'- cGGCGAucgcgcucugcCGGACucGCGGCGGCCacacGCGu -3' miRNA:   3'- aCCGCU-----------GCCUG--UGCCGCCGGccc-CGC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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