miRNA display CGI


Results 1 - 20 of 975 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21390 3' -65.8 NC_004812.1 + 98382 0.79 0.072098
Target:  5'- gGGUccucgGGCGG-CGCGGCGGCCgcGGGGCGg -3'
miRNA:   3'- aCCG-----CUGCCuGUGCCGCCGG--CCCCGC- -5'
21390 3' -65.8 NC_004812.1 + 119480 0.8 0.059052
Target:  5'- cGGCcGCGGGgcCGCGGCGGCaGGGGCGg -3'
miRNA:   3'- aCCGcUGCCU--GUGCCGCCGgCCCCGC- -5'
21390 3' -65.8 NC_004812.1 + 68087 0.8 0.060549
Target:  5'- cGGCaGACGaGACACgGGCGGUCGaGGGCGa -3'
miRNA:   3'- aCCG-CUGC-CUGUG-CCGCCGGC-CCCGC- -5'
21390 3' -65.8 NC_004812.1 + 105496 0.8 0.063652
Target:  5'- aGGCGAcCGGGCcCGGCGGCCGaguGGGUGu -3'
miRNA:   3'- aCCGCU-GCCUGuGCCGCCGGC---CCCGC- -5'
21390 3' -65.8 NC_004812.1 + 130462 0.8 0.066909
Target:  5'- gGGCGGCcGGCG-GGCGGCCGGcGGCGg -3'
miRNA:   3'- aCCGCUGcCUGUgCCGCCGGCC-CCGC- -5'
21390 3' -65.8 NC_004812.1 + 155732 0.79 0.070327
Target:  5'- gGGUGGgGGGCGCGcGCGGgCGGGGCu -3'
miRNA:   3'- aCCGCUgCCUGUGC-CGCCgGCCCCGc -5'
21390 3' -65.8 NC_004812.1 + 7622 0.79 0.070327
Target:  5'- -cGCGcCGGagacGCGCGGCGGCCGGGGuCGg -3'
miRNA:   3'- acCGCuGCC----UGUGCCGCCGGCCCC-GC- -5'
21390 3' -65.8 NC_004812.1 + 129088 0.79 0.072098
Target:  5'- aGGCGGCGGcgGCGGCGGgCGGGcGCGc -3'
miRNA:   3'- aCCGCUGCCugUGCCGCCgGCCC-CGC- -5'
21390 3' -65.8 NC_004812.1 + 71239 0.79 0.072098
Target:  5'- gGcGCGGCGGGgACGGCGGCggugggccggcuCGGGGCGc -3'
miRNA:   3'- aC-CGCUGCCUgUGCCGCCG------------GCCCCGC- -5'
21390 3' -65.8 NC_004812.1 + 94385 0.8 0.059052
Target:  5'- cUGGCGGCGGcguACGCGGCGGC-GGuGGCGu -3'
miRNA:   3'- -ACCGCUGCC---UGUGCCGCCGgCC-CCGC- -5'
21390 3' -65.8 NC_004812.1 + 11605 0.8 0.059052
Target:  5'- cGGCgGGCGGGCuCGGCGuGCCGGGaGCGu -3'
miRNA:   3'- aCCG-CUGCCUGuGCCGC-CGGCCC-CGC- -5'
21390 3' -65.8 NC_004812.1 + 100136 0.81 0.057591
Target:  5'- aGGCGugGcGGCGCgGGCGG-CGGGGCGg -3'
miRNA:   3'- aCCGCugC-CUGUG-CCGCCgGCCCCGC- -5'
21390 3' -65.8 NC_004812.1 + 129408 0.87 0.019861
Target:  5'- aGGCG-CGGGCGCGGCGGCgCGGcGGCGg -3'
miRNA:   3'- aCCGCuGCCUGUGCCGCCG-GCC-CCGC- -5'
21390 3' -65.8 NC_004812.1 + 109149 0.85 0.027669
Target:  5'- cGGCGACGGAC-CGGCcgucgGGCCuGGGGCGg -3'
miRNA:   3'- aCCGCUGCCUGuGCCG-----CCGG-CCCCGC- -5'
21390 3' -65.8 NC_004812.1 + 124917 0.85 0.027669
Target:  5'- cGGCGGCGGGgGCGGCGGCCcaucucccgcGGGGCc -3'
miRNA:   3'- aCCGCUGCCUgUGCCGCCGG----------CCCCGc -5'
21390 3' -65.8 NC_004812.1 + 109686 0.82 0.045242
Target:  5'- cGGCGGCGGAUguguccgccgcgGCGGCGGCCgccgcgcccgaccccGGGGCGc -3'
miRNA:   3'- aCCGCUGCCUG------------UGCCGCCGG---------------CCCCGC- -5'
21390 3' -65.8 NC_004812.1 + 148930 0.82 0.048305
Target:  5'- cGGCGGCGucggcGACgACGGUGGUCGGGGCGc -3'
miRNA:   3'- aCCGCUGC-----CUG-UGCCGCCGGCCCCGC- -5'
21390 3' -65.8 NC_004812.1 + 24801 0.81 0.053417
Target:  5'- gGGCGACGGGCACGGCcuGGUC-GGGCa -3'
miRNA:   3'- aCCGCUGCCUGUGCCG--CCGGcCCCGc -5'
21390 3' -65.8 NC_004812.1 + 91507 0.81 0.053417
Target:  5'- uUGGCGGCcGAgcCGGCGGCCGGGGCc -3'
miRNA:   3'- -ACCGCUGcCUguGCCGCCGGCCCCGc -5'
21390 3' -65.8 NC_004812.1 + 121839 0.81 0.053417
Target:  5'- gGGCGcuuGCGGGcCGCGGCGGCCGcGGCGa -3'
miRNA:   3'- aCCGC---UGCCU-GUGCCGCCGGCcCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.