miRNA display CGI


Results 1 - 20 of 975 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21390 3' -65.8 NC_004812.1 + 133237 1.08 0.00054
Target:  5'- gUGGCGACGGACACGGCGGCCGGGGCGg -3'
miRNA:   3'- -ACCGCUGCCUGUGCCGCCGGCCCCGC- -5'
21390 3' -65.8 NC_004812.1 + 46902 0.79 0.068597
Target:  5'- cGG-GGCGGGCGCGGCGGCCGccgccgcGGCGg -3'
miRNA:   3'- aCCgCUGCCUGUGCCGCCGGCc------CCGC- -5'
21390 3' -65.8 NC_004812.1 + 105166 0.79 0.070327
Target:  5'- uUGGCGGgGGuCGCGuGCGGCUGGuGGCGg -3'
miRNA:   3'- -ACCGCUgCCuGUGC-CGCCGGCC-CCGC- -5'
21390 3' -65.8 NC_004812.1 + 35222 0.65 0.531369
Target:  5'- aUGGaGACGGGCGacauCGG-GGCCuacguggugcucguGGGGCGc -3'
miRNA:   3'- -ACCgCUGCCUGU----GCCgCCGG--------------CCCCGC- -5'
21390 3' -65.8 NC_004812.1 + 155818 0.85 0.027669
Target:  5'- cGGCGGCGGGgGCGGCGGCCcaucucccgcGGGGCc -3'
miRNA:   3'- aCCGCUGCCUgUGCCGCCGG----------CCCCGc -5'
21390 3' -65.8 NC_004812.1 + 79435 0.84 0.029863
Target:  5'- cGGCGGCGGGgACGGCGccGCCGcGGGCGg -3'
miRNA:   3'- aCCGCUGCCUgUGCCGC--CGGC-CCCGC- -5'
21390 3' -65.8 NC_004812.1 + 88223 0.83 0.039473
Target:  5'- cGGaCGGCGG-CugGGCGGCgGGGGCGu -3'
miRNA:   3'- aCC-GCUGCCuGugCCGCCGgCCCCGC- -5'
21390 3' -65.8 NC_004812.1 + 146191 0.83 0.039473
Target:  5'- -cGCGGUGGACGCGGgGGUCGGGGCGg -3'
miRNA:   3'- acCGCUGCCUGUGCCgCCGGCCCCGC- -5'
21390 3' -65.8 NC_004812.1 + 91149 0.8 0.059052
Target:  5'- cGGgGACGGGCGgucCGGgGGCCGGGGgGa -3'
miRNA:   3'- aCCgCUGCCUGU---GCCgCCGGCCCCgC- -5'
21390 3' -65.8 NC_004812.1 + 71819 0.8 0.066909
Target:  5'- gUGGUGGCGGAagggggagggUGCGGCGGCCG-GGCGg -3'
miRNA:   3'- -ACCGCUGCCU----------GUGCCGCCGGCcCCGC- -5'
21390 3' -65.8 NC_004812.1 + 70261 0.8 0.064291
Target:  5'- gGGUGGCGGAuCGCGGUGGggggcaacucguuguCCGGGGCGu -3'
miRNA:   3'- aCCGCUGCCU-GUGCCGCC---------------GGCCCCGC- -5'
21390 3' -65.8 NC_004812.1 + 152740 0.81 0.053417
Target:  5'- gGGCGcuuGCGGGcCGCGGCGGCCGcGGCGa -3'
miRNA:   3'- aCCGC---UGCCU-GUGCCGCCGGCcCCGC- -5'
21390 3' -65.8 NC_004812.1 + 114497 0.88 0.015776
Target:  5'- gGGCGGCGGGCgACGGCGGacuCCGGGGCGc -3'
miRNA:   3'- aCCGCUGCCUG-UGCCGCC---GGCCCCGC- -5'
21390 3' -65.8 NC_004812.1 + 139300 0.8 0.065261
Target:  5'- gGGCGA-GG-UGCGGCGGCCGaGGGCGg -3'
miRNA:   3'- aCCGCUgCCuGUGCCGCCGGC-CCCGC- -5'
21390 3' -65.8 NC_004812.1 + 3900 0.87 0.019861
Target:  5'- aGGCG-CGGGCGCGGCGGCgCGGcGGCGg -3'
miRNA:   3'- aCCGCuGCCUGUGCCGCCG-GCC-CCGC- -5'
21390 3' -65.8 NC_004812.1 + 23422 0.82 0.048305
Target:  5'- cGGCGGCGucggcGACgACGGUGGUCGGGGCGc -3'
miRNA:   3'- aCCGCUGC-----CUG-UGCCGCCGGCCCCGC- -5'
21390 3' -65.8 NC_004812.1 + 4954 0.8 0.066909
Target:  5'- gGGCGGCcGGCG-GGCGGCCGGcGGCGg -3'
miRNA:   3'- aCCGCUGcCUGUgCCGCCGGCC-CCGC- -5'
21390 3' -65.8 NC_004812.1 + 30224 0.79 0.070327
Target:  5'- gGGUGGgGGGCGCGcGCGGgCGGGGCu -3'
miRNA:   3'- aCCGCUgCCUGUGC-CGCCgGCCCCGc -5'
21390 3' -65.8 NC_004812.1 + 40084 0.86 0.022566
Target:  5'- gGGCGGCGGGCgGCgGGCGGCCGGGcGCGc -3'
miRNA:   3'- aCCGCUGCCUG-UG-CCGCCGGCCC-CGC- -5'
21390 3' -65.8 NC_004812.1 + 82991 0.83 0.038487
Target:  5'- cGGCGugGGAgACGG-GcGCCGGGGCGa -3'
miRNA:   3'- aCCGCugCCUgUGCCgC-CGGCCCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.