miRNA display CGI


Results 21 - 40 of 975 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21390 3' -65.8 NC_004812.1 + 2547 0.79 0.075769
Target:  5'- gGcGCGGCGGuacucGCGCGGCGGCaGGGGCa -3'
miRNA:   3'- aC-CGCUGCC-----UGUGCCGCCGgCCCCGc -5'
21390 3' -65.8 NC_004812.1 + 2623 0.68 0.373581
Target:  5'- uUGGCGccGCGGcccagGCGCGGCGG-CGGcGCGu -3'
miRNA:   3'- -ACCGC--UGCC-----UGUGCCGCCgGCCcCGC- -5'
21390 3' -65.8 NC_004812.1 + 2815 0.68 0.403857
Target:  5'- cGGCGcgcgacgGCGGGCccguCGGcCGGCCacuccucggGGGGCa -3'
miRNA:   3'- aCCGC-------UGCCUGu---GCC-GCCGG---------CCCCGc -5'
21390 3' -65.8 NC_004812.1 + 2861 0.77 0.104354
Target:  5'- cGGCguccacGACGacGAgGCGGCGGCCGGcGGCGg -3'
miRNA:   3'- aCCG------CUGC--CUgUGCCGCCGGCC-CCGC- -5'
21390 3' -65.8 NC_004812.1 + 3081 0.7 0.303247
Target:  5'- cGcGCGuCGGuccaGGCGGgCGGGGCGg -3'
miRNA:   3'- aC-CGCuGCCugugCCGCCgGCCCCGC- -5'
21390 3' -65.8 NC_004812.1 + 3082 0.7 0.316459
Target:  5'- gGGCGGCGGgACgACGGCG-UgGGGGgGa -3'
miRNA:   3'- aCCGCUGCC-UG-UGCCGCcGgCCCCgC- -5'
21390 3' -65.8 NC_004812.1 + 3196 0.72 0.238153
Target:  5'- aGGCGGCGG-CGCGGCgcagcgGGCCcGaGGCGc -3'
miRNA:   3'- aCCGCUGCCuGUGCCG------CCGGcC-CCGC- -5'
21390 3' -65.8 NC_004812.1 + 3226 0.69 0.358664
Target:  5'- nGcGCGGCGGGC-CGaaggcGCGGCCGgagccgggcucGGGCGg -3'
miRNA:   3'- aC-CGCUGCCUGuGC-----CGCCGGC-----------CCCGC- -5'
21390 3' -65.8 NC_004812.1 + 3397 0.69 0.351363
Target:  5'- cGGCGGCGGaggGCGcCGGCguguGGCUGGGccccgGCGg -3'
miRNA:   3'- aCCGCUGCC---UGU-GCCG----CCGGCCC-----CGC- -5'
21390 3' -65.8 NC_004812.1 + 3493 0.78 0.092322
Target:  5'- cGGCGggccGCGGGCGCgggcccggggccGGCGGCCccgGGGGCGg -3'
miRNA:   3'- aCCGC----UGCCUGUG------------CCGCCGG---CCCCGC- -5'
21390 3' -65.8 NC_004812.1 + 3580 0.79 0.072098
Target:  5'- aGGCGGCGGcgGCGGCGGgCGGGcGCGc -3'
miRNA:   3'- aCCGCUGCCugUGCCGCCgGCCC-CGC- -5'
21390 3' -65.8 NC_004812.1 + 3737 0.68 0.36607
Target:  5'- cUGGCG-CGGGCcgcgcgccaGCaGCGGCgCGGcGGCGc -3'
miRNA:   3'- -ACCGCuGCCUG---------UGcCGCCG-GCC-CCGC- -5'
21390 3' -65.8 NC_004812.1 + 3775 0.76 0.120738
Target:  5'- cGGCGACGaGGCugACGGCGcGCaCGGcGGCGa -3'
miRNA:   3'- aCCGCUGC-CUG--UGCCGC-CG-GCC-CCGC- -5'
21390 3' -65.8 NC_004812.1 + 3900 0.87 0.019861
Target:  5'- aGGCG-CGGGCGCGGCGGCgCGGcGGCGg -3'
miRNA:   3'- aCCGCuGCCUGUGCCGCCG-GCC-CCGC- -5'
21390 3' -65.8 NC_004812.1 + 3935 0.77 0.099131
Target:  5'- cGGCGGCGGcacgGCGCGcGCGGCCGccagcccGGGCa -3'
miRNA:   3'- aCCGCUGCC----UGUGC-CGCCGGC-------CCCGc -5'
21390 3' -65.8 NC_004812.1 + 4041 0.77 0.106932
Target:  5'- cGGCGGCGG---CGGCGGCCGcGGCGu -3'
miRNA:   3'- aCCGCUGCCuguGCCGCCGGCcCCGC- -5'
21390 3' -65.8 NC_004812.1 + 4125 0.71 0.266173
Target:  5'- cGGCGGggcccucguCGGAgAgGGCGGCCGccaGGCGg -3'
miRNA:   3'- aCCGCU---------GCCUgUgCCGCCGGCc--CCGC- -5'
21390 3' -65.8 NC_004812.1 + 4221 0.76 0.123691
Target:  5'- cGGCGuCGGGCucggggGCGGCGGCggCGGcGGCGg -3'
miRNA:   3'- aCCGCuGCCUG------UGCCGCCG--GCC-CCGC- -5'
21390 3' -65.8 NC_004812.1 + 4254 0.69 0.354271
Target:  5'- nGGCGGCGcccgcCGCGGCGGCguucucgcgcgccagCaGGGGCGc -3'
miRNA:   3'- aCCGCUGCcu---GUGCCGCCG---------------G-CCCCGC- -5'
21390 3' -65.8 NC_004812.1 + 4321 0.65 0.531369
Target:  5'- aUGGaGACGGGCGacauCGG-GGCCuacguggugcucguGGGGCGc -3'
miRNA:   3'- -ACCgCUGCCUGU----GCCgCCGG--------------CCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.