miRNA display CGI


Results 21 - 40 of 975 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21390 3' -65.8 NC_004812.1 + 1268 0.66 0.524052
Target:  5'- -uGCGACGGGCAgauucCGGCccccaggguccccGGaggCGGGGCGc -3'
miRNA:   3'- acCGCUGCCUGU-----GCCG-------------CCg--GCCCCGC- -5'
21390 3' -65.8 NC_004812.1 + 126776 0.66 0.524052
Target:  5'- -uGCGACGGGCAgauucCGGCccccaggguccccGGaggCGGGGCGc -3'
miRNA:   3'- acCGCUGCCUGU-----GCCG-------------CCg--GCCCCGC- -5'
21390 3' -65.8 NC_004812.1 + 99539 0.66 0.519499
Target:  5'- uUGGgGACcaGGGCGgGGCggagcagcaccuggaGGCUGGGGUc -3'
miRNA:   3'- -ACCgCUG--CCUGUgCCG---------------CCGGCCCCGc -5'
21390 3' -65.8 NC_004812.1 + 81601 0.66 0.519499
Target:  5'- gGGCGACGaGguCGGCGagcacgccccuggccGCCaGGGCGu -3'
miRNA:   3'- aCCGCUGCcUguGCCGC---------------CGGcCCCGC- -5'
21390 3' -65.8 NC_004812.1 + 39830 0.66 0.519499
Target:  5'- aUGGCGgccgcgugcccguagGCGGuGCGgGG-GGCCGGGGg- -3'
miRNA:   3'- -ACCGC---------------UGCC-UGUgCCgCCGGCCCCgc -5'
21390 3' -65.8 NC_004812.1 + 93995 0.66 0.515868
Target:  5'- cGGaGGgGGugAUGGCguccagaaaccGGCCGuGGGCGu -3'
miRNA:   3'- aCCgCUgCCugUGCCG-----------CCGGC-CCCGC- -5'
21390 3' -65.8 NC_004812.1 + 137312 0.66 0.515868
Target:  5'- gUGGUaccuGACGGuGCACGcCgGGCCGGGGg- -3'
miRNA:   3'- -ACCG----CUGCC-UGUGCcG-CCGGCCCCgc -5'
21390 3' -65.8 NC_004812.1 + 20285 0.66 0.515868
Target:  5'- aGGuCGGgGGugGgCGGCGcGCCGGcGCa -3'
miRNA:   3'- aCC-GCUgCCugU-GCCGC-CGGCCcCGc -5'
21390 3' -65.8 NC_004812.1 + 135127 0.66 0.515868
Target:  5'- cGuCGugGG-CGCGcGCGGUCGGuGGCc -3'
miRNA:   3'- aCcGCugCCuGUGC-CGCCGGCC-CCGc -5'
21390 3' -65.8 NC_004812.1 + 90427 0.66 0.515868
Target:  5'- -uGUG-CGGGCGCGGgaCGG-CGGGGUGg -3'
miRNA:   3'- acCGCuGCCUGUGCC--GCCgGCCCCGC- -5'
21390 3' -65.8 NC_004812.1 + 81102 0.66 0.515868
Target:  5'- gUGGCGguGCGGGCGgcgUGGUgGGCCGuGGCc -3'
miRNA:   3'- -ACCGC--UGCCUGU---GCCG-CCGGCcCCGc -5'
21390 3' -65.8 NC_004812.1 + 54433 0.66 0.515868
Target:  5'- gUGGCGcCGGu--CGGCGGC--GGGCa -3'
miRNA:   3'- -ACCGCuGCCuguGCCGCCGgcCCCGc -5'
21390 3' -65.8 NC_004812.1 + 90148 0.66 0.515868
Target:  5'- -cGCGuccUGGACGCGGCGGCCcuGGaCGc -3'
miRNA:   3'- acCGCu--GCCUGUGCCGCCGGccCC-GC- -5'
21390 3' -65.8 NC_004812.1 + 45171 0.66 0.515868
Target:  5'- gGGUuccaGACGGGCGCGuGCgucacccaGGCCcGGGaGCGc -3'
miRNA:   3'- aCCG----CUGCCUGUGC-CG--------CCGG-CCC-CGC- -5'
21390 3' -65.8 NC_004812.1 + 154706 0.66 0.515868
Target:  5'- gUGGCGuGCGGuGCACGuGUGGUuuauUGGGGgGc -3'
miRNA:   3'- -ACCGC-UGCC-UGUGC-CGCCG----GCCCCgC- -5'
21390 3' -65.8 NC_004812.1 + 107291 0.66 0.515868
Target:  5'- -aGCGGuCGGugGgCGG-GGCCuuGGGGCGu -3'
miRNA:   3'- acCGCU-GCCugU-GCCgCCGG--CCCCGC- -5'
21390 3' -65.8 NC_004812.1 + 100469 0.66 0.515868
Target:  5'- gGGCguaGAgGGGCGCGGCcGCCcGGaGCGc -3'
miRNA:   3'- aCCG---CUgCCUGUGCCGcCGGcCC-CGC- -5'
21390 3' -65.8 NC_004812.1 + 30512 0.66 0.515868
Target:  5'- aGGgGACgcccgGGGC-CGGgGGCCGcgccgcgggacGGGCGg -3'
miRNA:   3'- aCCgCUG-----CCUGuGCCgCCGGC-----------CCCGC- -5'
21390 3' -65.8 NC_004812.1 + 96174 0.66 0.515868
Target:  5'- gGGCGGCGG-CGaGGUGGUCGcgccGGaGCGg -3'
miRNA:   3'- aCCGCUGCCuGUgCCGCCGGC----CC-CGC- -5'
21390 3' -65.8 NC_004812.1 + 11678 0.66 0.515868
Target:  5'- cGGCGAgCGG-CACucgGGCaGCUGcGGGUGg -3'
miRNA:   3'- aCCGCU-GCCuGUG---CCGcCGGC-CCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.