miRNA display CGI


Results 41 - 60 of 975 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21390 3' -65.8 NC_004812.1 + 20285 0.66 0.515868
Target:  5'- aGGuCGGgGGugGgCGGCGcGCCGGcGCa -3'
miRNA:   3'- aCC-GCUgCCugU-GCCGC-CGGCCcCGc -5'
21390 3' -65.8 NC_004812.1 + 11678 0.66 0.515868
Target:  5'- cGGCGAgCGG-CACucgGGCaGCUGcGGGUGg -3'
miRNA:   3'- aCCGCU-GCCuGUG---CCGcCGGC-CCCGC- -5'
21390 3' -65.8 NC_004812.1 + 137312 0.66 0.515868
Target:  5'- gUGGUaccuGACGGuGCACGcCgGGCCGGGGg- -3'
miRNA:   3'- -ACCG----CUGCC-UGUGCcG-CCGGCCCCgc -5'
21390 3' -65.8 NC_004812.1 + 107836 0.66 0.515868
Target:  5'- cGGUGAgGGccuCGCGGaGG-CGGGGCu -3'
miRNA:   3'- aCCGCUgCCu--GUGCCgCCgGCCCCGc -5'
21390 3' -65.8 NC_004812.1 + 90148 0.66 0.515868
Target:  5'- -cGCGuccUGGACGCGGCGGCCcuGGaCGc -3'
miRNA:   3'- acCGCu--GCCUGUGCCGCCGGccCC-GC- -5'
21390 3' -65.8 NC_004812.1 + 135127 0.66 0.515868
Target:  5'- cGuCGugGG-CGCGcGCGGUCGGuGGCc -3'
miRNA:   3'- aCcGCugCCuGUGC-CGCCGGCC-CCGc -5'
21390 3' -65.8 NC_004812.1 + 136366 0.66 0.514962
Target:  5'- cGGCGGgacccaaGGuCcCGGCGGCCGcgcuagccguugcGGGCGc -3'
miRNA:   3'- aCCGCUg------CCuGuGCCGCCGGC-------------CCCGC- -5'
21390 3' -65.8 NC_004812.1 + 82090 0.66 0.506836
Target:  5'- gGGCG-CGuGGCcCGGCuGGCCGGcGGaCa -3'
miRNA:   3'- aCCGCuGC-CUGuGCCG-CCGGCC-CC-Gc -5'
21390 3' -65.8 NC_004812.1 + 148497 0.66 0.506836
Target:  5'- gGGCGAgGGguGCGCGGgGGagggGaGGGCGa -3'
miRNA:   3'- aCCGCUgCC--UGUGCCgCCgg--C-CCCGC- -5'
21390 3' -65.8 NC_004812.1 + 23092 0.66 0.506836
Target:  5'- gGGCGAgGGguGCGCGGgGGagggGaGGGCGa -3'
miRNA:   3'- aCCGCUgCC--UGUGCCgCCgg--C-CCCGC- -5'
21390 3' -65.8 NC_004812.1 + 71969 0.66 0.506836
Target:  5'- gUGGUGGCcgucuGGCGCGGCGucGCCaGGGuCGa -3'
miRNA:   3'- -ACCGCUGc----CUGUGCCGC--CGGcCCC-GC- -5'
21390 3' -65.8 NC_004812.1 + 28488 0.66 0.506836
Target:  5'- cGGCGGCGGGCGgGGaaag-GGGGCu -3'
miRNA:   3'- aCCGCUGCCUGUgCCgccggCCCCGc -5'
21390 3' -65.8 NC_004812.1 + 22105 0.66 0.506836
Target:  5'- cGGUGGCGucCAUGGCGaugauCCGgGGGCa -3'
miRNA:   3'- aCCGCUGCcuGUGCCGCc----GGC-CCCGc -5'
21390 3' -65.8 NC_004812.1 + 105561 0.66 0.506836
Target:  5'- cGGgGAgGGGCcUGGCuGCCGGuccgcGGCGa -3'
miRNA:   3'- aCCgCUgCCUGuGCCGcCGGCC-----CCGC- -5'
21390 3' -65.8 NC_004812.1 + 124456 0.66 0.506836
Target:  5'- cGGgGGCGcccCGCcGCGGCgGGGGCc -3'
miRNA:   3'- aCCgCUGCcu-GUGcCGCCGgCCCCGc -5'
21390 3' -65.8 NC_004812.1 + 148782 0.66 0.506836
Target:  5'- gGGCGAgGGguGCGCGGgGGagggGaGGGCGa -3'
miRNA:   3'- aCCGCUgCC--UGUGCCgCCgg--C-CCCGC- -5'
21390 3' -65.8 NC_004812.1 + 148549 0.66 0.506836
Target:  5'- gGGCGAgGGguGCGCGGgGGagggGaGGGCGa -3'
miRNA:   3'- aCCGCUgCC--UGUGCCgCCgg--C-CCCGC- -5'
21390 3' -65.8 NC_004812.1 + 60078 0.66 0.506836
Target:  5'- gGGCGgagcgcacGCGGGCGagccccgGGUGcCCGGGGCa -3'
miRNA:   3'- aCCGC--------UGCCUGUg------CCGCcGGCCCCGc -5'
21390 3' -65.8 NC_004812.1 + 136171 0.66 0.506836
Target:  5'- gGGuUGGCGucCGCGGaCGuCCGGGGCa -3'
miRNA:   3'- aCC-GCUGCcuGUGCC-GCcGGCCCCGc -5'
21390 3' -65.8 NC_004812.1 + 122761 0.66 0.506836
Target:  5'- -cGCcacGCGGACGCuGCGGaacaccCCGGGGUGg -3'
miRNA:   3'- acCGc--UGCCUGUGcCGCC------GGCCCCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.