miRNA display CGI


Results 61 - 80 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21390 5' -54.5 NC_004812.1 + 10580 0.67 0.92763
Target:  5'- cGGUGCCGggG-GCAUuuaugcgcCGCGgagcgccgaCGUCAu -3'
miRNA:   3'- -CCGCGGCuuCuCGUA--------GCGCaa-------GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 125282 0.67 0.92763
Target:  5'- gGGCGCgCGcGAGAGCGcCGCGcgCGg-- -3'
miRNA:   3'- -CCGCG-GC-UUCUCGUaGCGCaaGCagu -5'
21390 5' -54.5 NC_004812.1 + 82045 0.67 0.92763
Target:  5'- gGGCGCCGGAaAGCGaaugCGCGUggcugCGg-- -3'
miRNA:   3'- -CCGCGGCUUcUCGUa---GCGCAa----GCagu -5'
21390 5' -54.5 NC_004812.1 + 156183 0.67 0.92763
Target:  5'- gGGCGCgCGcGAGAGCGcCGCGcgCGg-- -3'
miRNA:   3'- -CCGCG-GC-UUCUCGUaGCGCaaGCagu -5'
21390 5' -54.5 NC_004812.1 + 30348 0.67 0.922218
Target:  5'- cGGCGCCGGGaGGCGaggCGCGcgCGgCGg -3'
miRNA:   3'- -CCGCGGCUUcUCGUa--GCGCaaGCaGU- -5'
21390 5' -54.5 NC_004812.1 + 8303 0.67 0.922218
Target:  5'- uGCGCCG-GGAGCuccgCGCGUaCGcCGa -3'
miRNA:   3'- cCGCGGCuUCUCGua--GCGCAaGCaGU- -5'
21390 5' -54.5 NC_004812.1 + 18726 0.67 0.922218
Target:  5'- cGGCGCUGggGcGCcgCGCGccaUCGa-- -3'
miRNA:   3'- -CCGCGGCuuCuCGuaGCGCa--AGCagu -5'
21390 5' -54.5 NC_004812.1 + 124998 0.67 0.922218
Target:  5'- cGGCGCUGGAGGcgccccugcGCGgcgCGCGgccCGUCc -3'
miRNA:   3'- -CCGCGGCUUCU---------CGUa--GCGCaa-GCAGu -5'
21390 5' -54.5 NC_004812.1 + 54434 0.67 0.922217
Target:  5'- uGGCGCCGGucggcggcGGGCAgacguagaaggUCGCGUcgcCGUCc -3'
miRNA:   3'- -CCGCGGCUu-------CUCGU-----------AGCGCAa--GCAGu -5'
21390 5' -54.5 NC_004812.1 + 155856 0.67 0.922217
Target:  5'- cGGCGCCGGGaGGCGaggCGCGcgCGgCGg -3'
miRNA:   3'- -CCGCGGCUUcUCGUa--GCGCaaGCaGU- -5'
21390 5' -54.5 NC_004812.1 + 105509 0.67 0.922217
Target:  5'- cGGCgGCCGAGuGGGUGU-GCGgcCGUCAu -3'
miRNA:   3'- -CCG-CGGCUU-CUCGUAgCGCaaGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 35230 0.67 0.921106
Target:  5'- cGGUGuuGcGGAGguUCGCGguccccgcgugCGUCAg -3'
miRNA:   3'- -CCGCggCuUCUCguAGCGCaa---------GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 102950 0.67 0.919985
Target:  5'- gGGUgGCgGggGGGCGUCGgGgucguagucggugUCGUCGg -3'
miRNA:   3'- -CCG-CGgCuuCUCGUAGCgCa------------AGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 143049 0.67 0.916566
Target:  5'- uGGCGCgCGAgggGGAGUuuGUCGUGUUC-UCc -3'
miRNA:   3'- -CCGCG-GCU---UCUCG--UAGCGCAAGcAGu -5'
21390 5' -54.5 NC_004812.1 + 78145 0.67 0.916566
Target:  5'- cGGCGCaCGAGGccGGCAUCGCccgCGa-- -3'
miRNA:   3'- -CCGCG-GCUUC--UCGUAGCGcaaGCagu -5'
21390 5' -54.5 NC_004812.1 + 38866 0.67 0.916566
Target:  5'- gGGgGCCGAgagacgcggAGAGCG-CGCGggCGcCGg -3'
miRNA:   3'- -CCgCGGCU---------UCUCGUaGCGCaaGCaGU- -5'
21390 5' -54.5 NC_004812.1 + 2480 0.67 0.916566
Target:  5'- gGGCGCCGgcGgcGGCGgccUCGCGggCGggCGa -3'
miRNA:   3'- -CCGCGGCuuC--UCGU---AGCGCaaGCa-GU- -5'
21390 5' -54.5 NC_004812.1 + 70116 0.67 0.916565
Target:  5'- aGGCGCCG-GGcGCGUggcugcggccCGCGUUCGg-- -3'
miRNA:   3'- -CCGCGGCuUCuCGUA----------GCGCAAGCagu -5'
21390 5' -54.5 NC_004812.1 + 42228 0.67 0.916565
Target:  5'- cGC-CCGAGGAGgAcCGCGcgCGUCGc -3'
miRNA:   3'- cCGcGGCUUCUCgUaGCGCaaGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 93116 0.67 0.916565
Target:  5'- cGGUGUCGGgcGGcGGCGUCuGCGUgacguUCGUCGc -3'
miRNA:   3'- -CCGCGGCU--UC-UCGUAG-CGCA-----AGCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.