miRNA display CGI


Results 41 - 60 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21390 5' -54.5 NC_004812.1 + 153743 0.66 0.945579
Target:  5'- cGGUGCCGgcGcgcacggcguccucGGCGUCGCGccgCGUg- -3'
miRNA:   3'- -CCGCGGCuuC--------------UCGUAGCGCaa-GCAgu -5'
21390 5' -54.5 NC_004812.1 + 120399 0.66 0.942432
Target:  5'- gGGCGaCCGcGAGGGCGaCGCGgccgCGcUCAu -3'
miRNA:   3'- -CCGC-GGC-UUCUCGUaGCGCaa--GC-AGU- -5'
21390 5' -54.5 NC_004812.1 + 98619 0.66 0.942432
Target:  5'- gGGCGUCGGuggccAGCGcCGUGUUCGUg- -3'
miRNA:   3'- -CCGCGGCUuc---UCGUaGCGCAAGCAgu -5'
21390 5' -54.5 NC_004812.1 + 97534 0.66 0.942432
Target:  5'- aGC-CCGggGGGguUCGUGaccUUCGUCc -3'
miRNA:   3'- cCGcGGCuuCUCguAGCGC---AAGCAGu -5'
21390 5' -54.5 NC_004812.1 + 97166 0.66 0.942432
Target:  5'- -uCGCCGggGu-CGUCGUGggggUCGUCGu -3'
miRNA:   3'- ccGCGGCuuCucGUAGCGCa---AGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 155684 0.66 0.942432
Target:  5'- aGCGCCGgcGGGCucggCGCGcgCGa-- -3'
miRNA:   3'- cCGCGGCuuCUCGua--GCGCaaGCagu -5'
21390 5' -54.5 NC_004812.1 + 87896 0.66 0.941512
Target:  5'- cGGgGCCGggGGGCuuuauauccucCGCGUaCGcCAg -3'
miRNA:   3'- -CCgCGGCuuCUCGua---------GCGCAaGCaGU- -5'
21390 5' -54.5 NC_004812.1 + 6000 0.66 0.940583
Target:  5'- aGGCGCCGggGGGCGaggggaagggggaCGCGggCa--- -3'
miRNA:   3'- -CCGCGGCuuCUCGUa------------GCGCaaGcagu -5'
21390 5' -54.5 NC_004812.1 + 127566 0.67 0.937737
Target:  5'- gGGCGCgGggGAGgGggCGCGccccccgCGUCu -3'
miRNA:   3'- -CCGCGgCuuCUCgUa-GCGCaa-----GCAGu -5'
21390 5' -54.5 NC_004812.1 + 129226 0.67 0.937737
Target:  5'- cGGCGCCGGcGGAGCGcaccuggCGCGggccgcgCGcCAg -3'
miRNA:   3'- -CCGCGGCU-UCUCGUa------GCGCaa-----GCaGU- -5'
21390 5' -54.5 NC_004812.1 + 134768 0.67 0.937737
Target:  5'- cGGaCGCCGAGGGcGCGacgcccUCGgGUUCGg-- -3'
miRNA:   3'- -CC-GCGGCUUCU-CGU------AGCgCAAGCagu -5'
21390 5' -54.5 NC_004812.1 + 91202 0.67 0.937737
Target:  5'- cGGgGgCGggGGGCGcggcguccagcUCGCGgagcgCGUCGa -3'
miRNA:   3'- -CCgCgGCuuCUCGU-----------AGCGCaa---GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 42850 0.67 0.937737
Target:  5'- uGGCGCCGucG-GCcaggCGCGccagCGUCAc -3'
miRNA:   3'- -CCGCGGCuuCuCGua--GCGCaa--GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 104862 0.67 0.937737
Target:  5'- cGCGCCGgcG-GCcgCGgCGgUCGUCGu -3'
miRNA:   3'- cCGCGGCuuCuCGuaGC-GCaAGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 3718 0.67 0.937737
Target:  5'- cGGCGCCGGcGGAGCGcaccuggCGCGggccgcgCGcCAg -3'
miRNA:   3'- -CCGCGGCU-UCUCGUa------GCGCaa-----GCaGU- -5'
21390 5' -54.5 NC_004812.1 + 2057 0.67 0.937737
Target:  5'- gGGCGCgGggGAGgGggCGCGccccccgCGUCu -3'
miRNA:   3'- -CCGCGgCuuCUCgUa-GCGCaa-----GCAGu -5'
21390 5' -54.5 NC_004812.1 + 75129 0.67 0.937737
Target:  5'- aGCGaCGggGGGCG-CGUGUacgccgUCGUCGg -3'
miRNA:   3'- cCGCgGCuuCUCGUaGCGCA------AGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 36902 0.67 0.936769
Target:  5'- aGGCGCCGggGGGCGaggggaaggggaCGCGggCa--- -3'
miRNA:   3'- -CCGCGGCuuCUCGUa-----------GCGCaaGcagu -5'
21390 5' -54.5 NC_004812.1 + 82045 0.67 0.92763
Target:  5'- gGGCGCCGGAaAGCGaaugCGCGUggcugCGg-- -3'
miRNA:   3'- -CCGCGGCUUcUCGUa---GCGCAa----GCagu -5'
21390 5' -54.5 NC_004812.1 + 125282 0.67 0.92763
Target:  5'- gGGCGCgCGcGAGAGCGcCGCGcgCGg-- -3'
miRNA:   3'- -CCGCG-GC-UUCUCGUaGCGCaaGCagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.