miRNA display CGI


Results 21 - 40 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21390 5' -54.5 NC_004812.1 + 23629 0.66 0.955111
Target:  5'- gGGCGCCcaGAcGGGCGUcCGCGUgacccucgcccUCGUg- -3'
miRNA:   3'- -CCGCGG--CUuCUCGUA-GCGCA-----------AGCAgu -5'
21390 5' -54.5 NC_004812.1 + 46292 0.66 0.955111
Target:  5'- gGGCgGCCGGAGgccgcggcgGGCcgCGCGggCGaCAg -3'
miRNA:   3'- -CCG-CGGCUUC---------UCGuaGCGCaaGCaGU- -5'
21390 5' -54.5 NC_004812.1 + 139958 0.66 0.955111
Target:  5'- gGGgGCCgGGAGcgcgcGGCGUgGCGgaCGUCGg -3'
miRNA:   3'- -CCgCGG-CUUC-----UCGUAgCGCaaGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 91550 0.66 0.955111
Target:  5'- cGGCgGCCGccGAGac-CGCG-UCGUCGu -3'
miRNA:   3'- -CCG-CGGCuuCUCguaGCGCaAGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 134092 0.66 0.955111
Target:  5'- gGGCGCCGA----CGUCGCGgugCGUg- -3'
miRNA:   3'- -CCGCGGCUucucGUAGCGCaa-GCAgu -5'
21390 5' -54.5 NC_004812.1 + 85008 0.66 0.955111
Target:  5'- cGCGCCG-AGAGCGgcuguacgcgCGCGgggcUCGUg- -3'
miRNA:   3'- cCGCGGCuUCUCGUa---------GCGCa---AGCAgu -5'
21390 5' -54.5 NC_004812.1 + 97016 0.66 0.955111
Target:  5'- aGCGCCGcgaccGGGCcgCGagGUUCGUCc -3'
miRNA:   3'- cCGCGGCuu---CUCGuaGCg-CAAGCAGu -5'
21390 5' -54.5 NC_004812.1 + 68239 0.66 0.955111
Target:  5'- gGGgGCCGggGccucGGCcUCGaCGUccUCGUCc -3'
miRNA:   3'- -CCgCGGCuuC----UCGuAGC-GCA--AGCAGu -5'
21390 5' -54.5 NC_004812.1 + 122389 0.66 0.951117
Target:  5'- aGGCGCCGuugcgcuugccGGAGUAgcUGCGggCGUCc -3'
miRNA:   3'- -CCGCGGCu----------UCUCGUa-GCGCaaGCAGu -5'
21390 5' -54.5 NC_004812.1 + 47771 0.66 0.951117
Target:  5'- cGGCGCUGggG-GCGUCG-GcUCG-CGa -3'
miRNA:   3'- -CCGCGGCuuCuCGUAGCgCaAGCaGU- -5'
21390 5' -54.5 NC_004812.1 + 5878 0.66 0.951117
Target:  5'- cGgGCCGggGGGCGcgggCGCGggC-UCAg -3'
miRNA:   3'- cCgCGGCuuCUCGUa---GCGCaaGcAGU- -5'
21390 5' -54.5 NC_004812.1 + 53796 0.66 0.951117
Target:  5'- cGCGCCGccccguGGAGagGUCGCGcUCGUa- -3'
miRNA:   3'- cCGCGGCu-----UCUCg-UAGCGCaAGCAgu -5'
21390 5' -54.5 NC_004812.1 + 74925 0.66 0.951117
Target:  5'- aGGCGCgCGAgcgggucgggGGAGcCGUCGCGcgCcgcgGUCAg -3'
miRNA:   3'- -CCGCG-GCU----------UCUC-GUAGCGCaaG----CAGU- -5'
21390 5' -54.5 NC_004812.1 + 36779 0.66 0.951117
Target:  5'- cGgGCCGggGGGCGcgggCGCGggC-UCAg -3'
miRNA:   3'- cCgCGGCuuCUCGUa---GCGCaaGcAGU- -5'
21390 5' -54.5 NC_004812.1 + 70572 0.66 0.951117
Target:  5'- aGCGCCGcGAGAGgGcCGCGUUgGcCGa -3'
miRNA:   3'- cCGCGGC-UUCUCgUaGCGCAAgCaGU- -5'
21390 5' -54.5 NC_004812.1 + 115371 0.66 0.949874
Target:  5'- cGGCGCCGAcAGAcgaaggcggcgaccGCAgCGCGUagUCGcCGc -3'
miRNA:   3'- -CCGCGGCU-UCU--------------CGUaGCGCA--AGCaGU- -5'
21390 5' -54.5 NC_004812.1 + 42388 0.66 0.946892
Target:  5'- cGGCGCCGGcguuuuguGGGCAUCGUGggaGg-- -3'
miRNA:   3'- -CCGCGGCUu-------CUCGUAGCGCaagCagu -5'
21390 5' -54.5 NC_004812.1 + 55770 0.66 0.946892
Target:  5'- cGCGCCcugccccuGGGCAgcccCGCGgUCGUCAg -3'
miRNA:   3'- cCGCGGcuu-----CUCGUa---GCGCaAGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 145748 0.66 0.946892
Target:  5'- cGgGUCGggGGGC-UCGuCGgUCGUCGc -3'
miRNA:   3'- cCgCGGCuuCUCGuAGC-GCaAGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 153743 0.66 0.945579
Target:  5'- cGGUGCCGgcGcgcacggcguccucGGCGUCGCGccgCGUg- -3'
miRNA:   3'- -CCGCGGCuuC--------------UCGUAGCGCaa-GCAgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.