miRNA display CGI


Results 21 - 40 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21390 5' -54.5 NC_004812.1 + 21176 0.66 0.962422
Target:  5'- gGGaCGCCGAGGcgcGCGUCGUGgcCGa-- -3'
miRNA:   3'- -CC-GCGGCUUCu--CGUAGCGCaaGCagu -5'
21390 5' -54.5 NC_004812.1 + 23425 0.66 0.961382
Target:  5'- cGGCGUCGGcgacgacgguggucGGGGCGcgagaGCGggUCGUCGg -3'
miRNA:   3'- -CCGCGGCU--------------UCUCGUag---CGCa-AGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 23629 0.66 0.955111
Target:  5'- gGGCGCCcaGAcGGGCGUcCGCGUgacccucgcccUCGUg- -3'
miRNA:   3'- -CCGCGG--CUuCUCGUA-GCGCA-----------AGCAgu -5'
21390 5' -54.5 NC_004812.1 + 24514 0.68 0.904548
Target:  5'- cGCGCCGcGGGGGCugcgGUCGgGgcugCGUCAc -3'
miRNA:   3'- cCGCGGC-UUCUCG----UAGCgCaa--GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 27302 0.68 0.904548
Target:  5'- cGGCGCCGAGGccgcCGUCGCcgccGUgcgcgcCGUCAg -3'
miRNA:   3'- -CCGCGGCUUCuc--GUAGCG----CAa-----GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 30348 0.67 0.922218
Target:  5'- cGGCGCCGGGaGGCGaggCGCGcgCGgCGg -3'
miRNA:   3'- -CCGCGGCUUcUCGUa--GCGCaaGCaGU- -5'
21390 5' -54.5 NC_004812.1 + 30532 0.83 0.207691
Target:  5'- aGGCGCCGggGGGCAggcgcagggcgCGCGgccgCGUCAg -3'
miRNA:   3'- -CCGCGGCuuCUCGUa----------GCGCaa--GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 30535 0.7 0.831039
Target:  5'- cGCGCCGcgggacgggcGGGCGUCGCGcggcgCGUCGc -3'
miRNA:   3'- cCGCGGCuu--------CUCGUAGCGCaa---GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 32614 0.66 0.955111
Target:  5'- aGGCGCCGc-GGGCGUCGCa------- -3'
miRNA:   3'- -CCGCGGCuuCUCGUAGCGcaagcagu -5'
21390 5' -54.5 NC_004812.1 + 33685 0.71 0.777863
Target:  5'- cGCGCCucGGgcaccGGCGUCGCGgcCGUCGg -3'
miRNA:   3'- cCGCGGcuUC-----UCGUAGCGCaaGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 35230 0.67 0.921106
Target:  5'- cGGUGuuGcGGAGguUCGCGguccccgcgugCGUCAg -3'
miRNA:   3'- -CCGCggCuUCUCguAGCGCaa---------GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 35812 0.66 0.962422
Target:  5'- cGGgGCCGuggggcuGGGCGUCGC---CGUCGc -3'
miRNA:   3'- -CCgCGGCuu-----CUCGUAGCGcaaGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 35887 0.7 0.831039
Target:  5'- cGCGCCGggGGGCcgUGCGc-CG-CAg -3'
miRNA:   3'- cCGCGGCuuCUCGuaGCGCaaGCaGU- -5'
21390 5' -54.5 NC_004812.1 + 36779 0.66 0.951117
Target:  5'- cGgGCCGggGGGCGcgggCGCGggC-UCAg -3'
miRNA:   3'- cCgCGGCuuCUCGUa---GCGCaaGcAGU- -5'
21390 5' -54.5 NC_004812.1 + 36902 0.67 0.936769
Target:  5'- aGGCGCCGggGGGCGaggggaaggggaCGCGggCa--- -3'
miRNA:   3'- -CCGCGGCuuCUCGUa-----------GCGCaaGcagu -5'
21390 5' -54.5 NC_004812.1 + 38866 0.67 0.916566
Target:  5'- gGGgGCCGAgagacgcggAGAGCG-CGCGggCGcCGg -3'
miRNA:   3'- -CCgCGGCU---------UCUCGUaGCGCaaGCaGU- -5'
21390 5' -54.5 NC_004812.1 + 41464 0.69 0.847401
Target:  5'- cGGUGCCGcAGGGC--CGCccUCGUCAg -3'
miRNA:   3'- -CCGCGGCuUCUCGuaGCGcaAGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 42228 0.67 0.916565
Target:  5'- cGC-CCGAGGAGgAcCGCGcgCGUCGc -3'
miRNA:   3'- cCGcGGCUUCUCgUaGCGCaaGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 42346 0.67 0.92763
Target:  5'- cGGCGCCGcgggucuucGGGGCG--GUGUUUGUCGc -3'
miRNA:   3'- -CCGCGGCu--------UCUCGUagCGCAAGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 42388 0.66 0.946892
Target:  5'- cGGCGCCGGcguuuuguGGGCAUCGUGggaGg-- -3'
miRNA:   3'- -CCGCGGCUu-------CUCGUAGCGCaagCagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.