miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21390 5' -54.5 NC_004812.1 + 2057 0.67 0.937737
Target:  5'- gGGCGCgGggGAGgGggCGCGccccccgCGUCu -3'
miRNA:   3'- -CCGCGgCuuCUCgUa-GCGCaa-----GCAGu -5'
21390 5' -54.5 NC_004812.1 + 2297 0.66 0.958878
Target:  5'- cGGCGUCGggGuccggcucgAGCAgggCGCGcgCG-CAg -3'
miRNA:   3'- -CCGCGGCuuC---------UCGUa--GCGCaaGCaGU- -5'
21390 5' -54.5 NC_004812.1 + 2480 0.67 0.916566
Target:  5'- gGGCGCCGgcGgcGGCGgccUCGCGggCGggCGa -3'
miRNA:   3'- -CCGCGGCuuC--UCGU---AGCGCaaGCa-GU- -5'
21390 5' -54.5 NC_004812.1 + 3464 0.68 0.877725
Target:  5'- gGGC-CCGgcGGGCgGUCGCGc-CGUCAg -3'
miRNA:   3'- -CCGcGGCuuCUCG-UAGCGCaaGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 3630 0.69 0.839315
Target:  5'- cGCGCCGgcGGGCG-CGCGgcgccgcccgCGUCu -3'
miRNA:   3'- cCGCGGCuuCUCGUaGCGCaa--------GCAGu -5'
21390 5' -54.5 NC_004812.1 + 3718 0.67 0.937737
Target:  5'- cGGCGCCGGcGGAGCGcaccuggCGCGggccgcgCGcCAg -3'
miRNA:   3'- -CCGCGGCU-UCUCGUa------GCGCaa-----GCaGU- -5'
21390 5' -54.5 NC_004812.1 + 4050 0.68 0.877725
Target:  5'- cGGCgGCCGc--GGCGUCGuCGUcgUCGUCGu -3'
miRNA:   3'- -CCG-CGGCuucUCGUAGC-GCA--AGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 4573 0.7 0.813953
Target:  5'- gGGCG-CGAAGAGCAggCGCGUgaugagggCGUa- -3'
miRNA:   3'- -CCGCgGCUUCUCGUa-GCGCAa-------GCAgu -5'
21390 5' -54.5 NC_004812.1 + 4944 0.71 0.758999
Target:  5'- cGGCGCUGGAGGGCGgccgGCGggCGg-- -3'
miRNA:   3'- -CCGCGGCUUCUCGUag--CGCaaGCagu -5'
21390 5' -54.5 NC_004812.1 + 5336 0.68 0.910675
Target:  5'- gGGCGCCGcccGGGgucGGCGggggCGCGgcggCGUCGa -3'
miRNA:   3'- -CCGCGGC---UUC---UCGUa---GCGCaa--GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 5878 0.66 0.951117
Target:  5'- cGgGCCGggGGGCGcgggCGCGggC-UCAg -3'
miRNA:   3'- cCgCGGCuuCUCGUa---GCGCaaGcAGU- -5'
21390 5' -54.5 NC_004812.1 + 6000 0.66 0.940583
Target:  5'- aGGCGCCGggGGGCGaggggaagggggaCGCGggCa--- -3'
miRNA:   3'- -CCGCGGCuuCUCGUa------------GCGCaaGcagu -5'
21390 5' -54.5 NC_004812.1 + 8303 0.67 0.922218
Target:  5'- uGCGCCG-GGAGCuccgCGCGUaCGcCGa -3'
miRNA:   3'- cCGCGGCuUCUCGua--GCGCAaGCaGU- -5'
21390 5' -54.5 NC_004812.1 + 8636 0.66 0.962422
Target:  5'- cGGCGCCauGAgcacGGAGCGcCGCGggggCGUgGa -3'
miRNA:   3'- -CCGCGG--CU----UCUCGUaGCGCaa--GCAgU- -5'
21390 5' -54.5 NC_004812.1 + 9773 0.69 0.86298
Target:  5'- cGCGCCGgcG-GCcgCGCGggUGUCc -3'
miRNA:   3'- cCGCGGCuuCuCGuaGCGCaaGCAGu -5'
21390 5' -54.5 NC_004812.1 + 10580 0.67 0.92763
Target:  5'- cGGUGCCGggG-GCAUuuaugcgcCGCGgagcgccgaCGUCAu -3'
miRNA:   3'- -CCGCGGCuuCuCGUA--------GCGCaa-------GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 13293 0.66 0.962422
Target:  5'- cGGCGCgGcGGGGCGUCcGCGUcucCGcCGc -3'
miRNA:   3'- -CCGCGgCuUCUCGUAG-CGCAa--GCaGU- -5'
21390 5' -54.5 NC_004812.1 + 14419 0.7 0.804269
Target:  5'- aGGCGCCGGAGAGCuucacGUacauguucugcgcCGCGauccgCGUCGc -3'
miRNA:   3'- -CCGCGGCUUCUCG-----UA-------------GCGCaa---GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 17600 0.68 0.884771
Target:  5'- gGGCGUCGGAGgacuuccgcgccGGCcUCGUGUccugguggUCGUCGg -3'
miRNA:   3'- -CCGCGGCUUC------------UCGuAGCGCA--------AGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 18726 0.67 0.922218
Target:  5'- cGGCGCUGggGcGCcgCGCGccaUCGa-- -3'
miRNA:   3'- -CCGCGGCuuCuCGuaGCGCa--AGCagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.