Results 1 - 20 of 171 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21390 | 5' | -54.5 | NC_004812.1 | + | 70572 | 0.66 | 0.951117 |
Target: 5'- aGCGCCGcGAGAGgGcCGCGUUgGcCGa -3' miRNA: 3'- cCGCGGC-UUCUCgUaGCGCAAgCaGU- -5' |
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21390 | 5' | -54.5 | NC_004812.1 | + | 97166 | 0.66 | 0.942432 |
Target: 5'- -uCGCCGggGu-CGUCGUGggggUCGUCGu -3' miRNA: 3'- ccGCGGCuuCucGUAGCGCa---AGCAGU- -5' |
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21390 | 5' | -54.5 | NC_004812.1 | + | 155684 | 0.66 | 0.942432 |
Target: 5'- aGCGCCGgcGGGCucggCGCGcgCGa-- -3' miRNA: 3'- cCGCGGCuuCUCGua--GCGCaaGCagu -5' |
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21390 | 5' | -54.5 | NC_004812.1 | + | 56439 | 0.66 | 0.958878 |
Target: 5'- aGGCGCCGGGcGAuCGUCGCccccugGUUggcCGUCAc -3' miRNA: 3'- -CCGCGGCUU-CUcGUAGCG------CAA---GCAGU- -5' |
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21390 | 5' | -54.5 | NC_004812.1 | + | 115371 | 0.66 | 0.949874 |
Target: 5'- cGGCGCCGAcAGAcgaaggcggcgaccGCAgCGCGUagUCGcCGc -3' miRNA: 3'- -CCGCGGCU-UCU--------------CGUaGCGCA--AGCaGU- -5' |
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21390 | 5' | -54.5 | NC_004812.1 | + | 5878 | 0.66 | 0.951117 |
Target: 5'- cGgGCCGggGGGCGcgggCGCGggC-UCAg -3' miRNA: 3'- cCgCGGCuuCUCGUa---GCGCaaGcAGU- -5' |
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21390 | 5' | -54.5 | NC_004812.1 | + | 97016 | 0.66 | 0.955111 |
Target: 5'- aGCGCCGcgaccGGGCcgCGagGUUCGUCc -3' miRNA: 3'- cCGCGGCuu---CUCGuaGCg-CAAGCAGu -5' |
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21390 | 5' | -54.5 | NC_004812.1 | + | 53796 | 0.66 | 0.951117 |
Target: 5'- cGCGCCGccccguGGAGagGUCGCGcUCGUa- -3' miRNA: 3'- cCGCGGCu-----UCUCg-UAGCGCaAGCAgu -5' |
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21390 | 5' | -54.5 | NC_004812.1 | + | 46292 | 0.66 | 0.955111 |
Target: 5'- gGGCgGCCGGAGgccgcggcgGGCcgCGCGggCGaCAg -3' miRNA: 3'- -CCG-CGGCUUC---------UCGuaGCGCaaGCaGU- -5' |
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21390 | 5' | -54.5 | NC_004812.1 | + | 122842 | 0.66 | 0.945579 |
Target: 5'- cGGUGCCGgcGcgcacggcguccucGGCGUCGCGccgCGUg- -3' miRNA: 3'- -CCGCGGCuuC--------------UCGUAGCGCaa-GCAgu -5' |
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21390 | 5' | -54.5 | NC_004812.1 | + | 6000 | 0.66 | 0.940583 |
Target: 5'- aGGCGCCGggGGGCGaggggaagggggaCGCGggCa--- -3' miRNA: 3'- -CCGCGGCuuCUCGUa------------GCGCaaGcagu -5' |
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21390 | 5' | -54.5 | NC_004812.1 | + | 23629 | 0.66 | 0.955111 |
Target: 5'- gGGCGCCcaGAcGGGCGUcCGCGUgacccucgcccUCGUg- -3' miRNA: 3'- -CCGCGG--CUuCUCGUA-GCGCA-----------AGCAgu -5' |
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21390 | 5' | -54.5 | NC_004812.1 | + | 32614 | 0.66 | 0.955111 |
Target: 5'- aGGCGCCGc-GGGCGUCGCa------- -3' miRNA: 3'- -CCGCGGCuuCUCGUAGCGcaagcagu -5' |
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21390 | 5' | -54.5 | NC_004812.1 | + | 85008 | 0.66 | 0.955111 |
Target: 5'- cGCGCCG-AGAGCGgcuguacgcgCGCGgggcUCGUg- -3' miRNA: 3'- cCGCGGCuUCUCGUa---------GCGCa---AGCAgu -5' |
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21390 | 5' | -54.5 | NC_004812.1 | + | 98551 | 0.66 | 0.960322 |
Target: 5'- gGGCGCCGAGGGaguccacgcGCuccccgcccagcacgAggggCGCGUcCGUCAg -3' miRNA: 3'- -CCGCGGCUUCU---------CG---------------Ua---GCGCAaGCAGU- -5' |
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21390 | 5' | -54.5 | NC_004812.1 | + | 68239 | 0.66 | 0.955111 |
Target: 5'- gGGgGCCGggGccucGGCcUCGaCGUccUCGUCc -3' miRNA: 3'- -CCgCGGCuuC----UCGuAGC-GCA--AGCAGu -5' |
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21390 | 5' | -54.5 | NC_004812.1 | + | 127805 | 0.66 | 0.958878 |
Target: 5'- cGGCGUCGggGuccggcucgAGCAgggCGCGcgCG-CAg -3' miRNA: 3'- -CCGCGGCuuC---------UCGUa--GCGCaaGCaGU- -5' |
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21390 | 5' | -54.5 | NC_004812.1 | + | 90506 | 0.66 | 0.958878 |
Target: 5'- gGGCGCgGGgagGGGGCGUC-CGgucacUCGUCc -3' miRNA: 3'- -CCGCGgCU---UCUCGUAGcGCa----AGCAGu -5' |
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21390 | 5' | -54.5 | NC_004812.1 | + | 74925 | 0.66 | 0.951117 |
Target: 5'- aGGCGCgCGAgcgggucgggGGAGcCGUCGCGcgCcgcgGUCAg -3' miRNA: 3'- -CCGCG-GCU----------UCUC-GUAGCGCaaG----CAGU- -5' |
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21390 | 5' | -54.5 | NC_004812.1 | + | 44015 | 0.66 | 0.962422 |
Target: 5'- cGGaGCCGggG-GCGUCGUccgCGUCc -3' miRNA: 3'- -CCgCGGCuuCuCGUAGCGcaaGCAGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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