miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21390 5' -54.5 NC_004812.1 + 133274 1.11 0.003564
Target:  5'- gGGCGCCGAAGAGCAUCGCGUUCGUCAu -3'
miRNA:   3'- -CCGCGGCUUCUCGUAGCGCAAGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 30532 0.83 0.207691
Target:  5'- aGGCGCCGggGGGCAggcgcagggcgCGCGgccgCGUCAg -3'
miRNA:   3'- -CCGCGGCuuCUCGUa----------GCGCaa--GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 80114 0.8 0.311869
Target:  5'- cGGCcucgGCCGAcAGAGCGUCGCGUaggccggCGUCAa -3'
miRNA:   3'- -CCG----CGGCU-UCUCGUAGCGCAa------GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 52890 0.76 0.505079
Target:  5'- cGGUGCCGAcggugcagggcucgAGGGCGUCGCGcUCGa-- -3'
miRNA:   3'- -CCGCGGCU--------------UCUCGUAGCGCaAGCagu -5'
21390 5' -54.5 NC_004812.1 + 106631 0.75 0.517749
Target:  5'- cGCGCCGAGGAcgcagGCAUCGacaUCGUCAu -3'
miRNA:   3'- cCGCGGCUUCU-----CGUAGCgcaAGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 58984 0.75 0.547443
Target:  5'- cGGCGCCGuccGAGag-CGCGaUCGUCAg -3'
miRNA:   3'- -CCGCGGCuu-CUCguaGCGCaAGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 114110 0.75 0.547444
Target:  5'- cGGCGCCGAgcgccAGcGCGUCGCGgaagagUUCGUUg -3'
miRNA:   3'- -CCGCGGCU-----UCuCGUAGCGC------AAGCAGu -5'
21390 5' -54.5 NC_004812.1 + 53555 0.74 0.608216
Target:  5'- gGGCGCCGAggugcuccgGGAGCA-CGCGUacagccgcCGUCGu -3'
miRNA:   3'- -CCGCGGCU---------UCUCGUaGCGCAa-------GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 69821 0.73 0.62869
Target:  5'- gGGgGCCGAGGGGguUCGcCGUccgCGUCc -3'
miRNA:   3'- -CCgCGGCUUCUCguAGC-GCAa--GCAGu -5'
21390 5' -54.5 NC_004812.1 + 147026 0.73 0.638936
Target:  5'- gGGCGCUGAgaaAGGGCGUCGaaugcgagGUUCGUUc -3'
miRNA:   3'- -CCGCGGCU---UCUCGUAGCg-------CAAGCAGu -5'
21390 5' -54.5 NC_004812.1 + 146346 0.73 0.649175
Target:  5'- cGCGCCGucGGcuGCGUCGCGgcgUUCGUCc -3'
miRNA:   3'- cCGCGGCuuCU--CGUAGCGC---AAGCAGu -5'
21390 5' -54.5 NC_004812.1 + 106522 0.73 0.659401
Target:  5'- gGGCGCCGgcGGccGCggCGCcUUCGUCAc -3'
miRNA:   3'- -CCGCGGCuuCU--CGuaGCGcAAGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 98706 0.73 0.67978
Target:  5'- cGCGCCGggGgcGGCggCGCGgggUCGUUc -3'
miRNA:   3'- cCGCGGCuuC--UCGuaGCGCa--AGCAGu -5'
21390 5' -54.5 NC_004812.1 + 45463 0.72 0.719001
Target:  5'- aGGUGCCGGAgggagcgcacggcGAGCAUgGCGgcggcccggCGUCAa -3'
miRNA:   3'- -CCGCGGCUU-------------CUCGUAgCGCaa-------GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 102767 0.72 0.719993
Target:  5'- cGGCGUCGucGAGCcccccCGCGUggucUCGUCGc -3'
miRNA:   3'- -CCGCGGCuuCUCGua---GCGCA----AGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 125038 0.72 0.729881
Target:  5'- cGCGCCGuucGAcGUcgcggccgagGUCGCGUUCGUCGc -3'
miRNA:   3'- cCGCGGCuu-CU-CG----------UAGCGCAAGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 112776 0.71 0.749393
Target:  5'- cGGCGCCGc-GAGCcgCGCGgcggcuccccCGUCGg -3'
miRNA:   3'- -CCGCGGCuuCUCGuaGCGCaa--------GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 77574 0.71 0.758998
Target:  5'- cGGCGCgGAGGccacgugguaccGGCgGUCGCGggCGUCc -3'
miRNA:   3'- -CCGCGgCUUC------------UCG-UAGCGCaaGCAGu -5'
21390 5' -54.5 NC_004812.1 + 130452 0.71 0.758998
Target:  5'- cGGCGCUGGAGGGCGgccgGCGggCGg-- -3'
miRNA:   3'- -CCGCGGCUUCUCGUag--CGCaaGCagu -5'
21390 5' -54.5 NC_004812.1 + 4944 0.71 0.758999
Target:  5'- cGGCGCUGGAGGGCGgccgGCGggCGg-- -3'
miRNA:   3'- -CCGCGGCUUCUCGUag--CGCaaGCagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.