miRNA display CGI


Results 21 - 40 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21390 5' -54.5 NC_004812.1 + 109611 0.71 0.777863
Target:  5'- uGGCGCCccgGGGGCAg-GCGUUCG-CAg -3'
miRNA:   3'- -CCGCGGcu-UCUCGUagCGCAAGCaGU- -5'
21390 5' -54.5 NC_004812.1 + 33685 0.71 0.777863
Target:  5'- cGCGCCucGGgcaccGGCGUCGCGgcCGUCGg -3'
miRNA:   3'- cCGCGGcuUC-----UCGUAGCGCaaGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 153194 0.71 0.786186
Target:  5'- cGGCGCCGGAGGGCcgCcggggggaggcggGCGgcgaGUCGc -3'
miRNA:   3'- -CCGCGGCUUCUCGuaG-------------CGCaag-CAGU- -5'
21390 5' -54.5 NC_004812.1 + 122293 0.71 0.786186
Target:  5'- cGGCGCCGGAGGGCcgCcggggggaggcggGCGgcgaGUCGc -3'
miRNA:   3'- -CCGCGGCUUCUCGuaG-------------CGCaag-CAGU- -5'
21390 5' -54.5 NC_004812.1 + 154951 0.71 0.787104
Target:  5'- cGGCGCCGcggccaacggGGGAGCggCGCGUcaUCGaUCc -3'
miRNA:   3'- -CCGCGGC----------UUCUCGuaGCGCA--AGC-AGu -5'
21390 5' -54.5 NC_004812.1 + 131067 0.71 0.787104
Target:  5'- aGGCGCCcgcGGAGAGCGUgcaCGCGUgCGg-- -3'
miRNA:   3'- -CCGCGG---CUUCUCGUA---GCGCAaGCagu -5'
21390 5' -54.5 NC_004812.1 + 89289 0.71 0.787104
Target:  5'- cGGCGCgGAGccccGGCGUCGCGcUUCGcgCAg -3'
miRNA:   3'- -CCGCGgCUUc---UCGUAGCGC-AAGCa-GU- -5'
21390 5' -54.5 NC_004812.1 + 124050 0.71 0.787104
Target:  5'- cGGCGCCGcggccaacggGGGAGCggCGCGUcaUCGaUCc -3'
miRNA:   3'- -CCGCGGC----------UUCUCGuaGCGCA--AGC-AGu -5'
21390 5' -54.5 NC_004812.1 + 55861 0.7 0.796205
Target:  5'- aGGCGCCGcagcAGGGGCGUCGUcaGgugUgGUCGu -3'
miRNA:   3'- -CCGCGGC----UUCUCGUAGCG--Ca--AgCAGU- -5'
21390 5' -54.5 NC_004812.1 + 14419 0.7 0.804269
Target:  5'- aGGCGCCGGAGAGCuucacGUacauguucugcgcCGCGauccgCGUCGc -3'
miRNA:   3'- -CCGCGGCUUCUCG-----UA-------------GCGCaa---GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 60326 0.7 0.805157
Target:  5'- uGGcCGCCGucGAGCAUCGUGaaggugaUGUCGg -3'
miRNA:   3'- -CC-GCGGCuuCUCGUAGCGCaa-----GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 143640 0.7 0.805158
Target:  5'- cGGCcCCGGgcgcGGAGCG-CGCGUUCGacuUCAa -3'
miRNA:   3'- -CCGcGGCU----UCUCGUaGCGCAAGC---AGU- -5'
21390 5' -54.5 NC_004812.1 + 83640 0.7 0.805158
Target:  5'- gGGCGCCGAcgccgcccugcgAGAG-GUCGUG-UCGUCc -3'
miRNA:   3'- -CCGCGGCU------------UCUCgUAGCGCaAGCAGu -5'
21390 5' -54.5 NC_004812.1 + 4573 0.7 0.813953
Target:  5'- gGGCG-CGAAGAGCAggCGCGUgaugagggCGUa- -3'
miRNA:   3'- -CCGCgGCUUCUCGUa-GCGCAa-------GCAgu -5'
21390 5' -54.5 NC_004812.1 + 130081 0.7 0.813953
Target:  5'- gGGCG-CGAAGAGCAggCGCGUgaugagggCGUa- -3'
miRNA:   3'- -CCGCgGCUUCUCGUa-GCGCAa-------GCAgu -5'
21390 5' -54.5 NC_004812.1 + 69927 0.7 0.822583
Target:  5'- aGGCGCUGggGcuGCGagagaUCGUGUUggcCGUCAa -3'
miRNA:   3'- -CCGCGGCuuCu-CGU-----AGCGCAA---GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 60270 0.7 0.822583
Target:  5'- gGGCGCCGGu-GGCGUUGCG-UCG-CGa -3'
miRNA:   3'- -CCGCGGCUucUCGUAGCGCaAGCaGU- -5'
21390 5' -54.5 NC_004812.1 + 139323 0.7 0.822583
Target:  5'- cGGCG-CGGAGAGCGaCGCGggCGa-- -3'
miRNA:   3'- -CCGCgGCUUCUCGUaGCGCaaGCagu -5'
21390 5' -54.5 NC_004812.1 + 35887 0.7 0.831039
Target:  5'- cGCGCCGggGGGCcgUGCGc-CG-CAg -3'
miRNA:   3'- cCGCGGCuuCUCGuaGCGCaaGCaGU- -5'
21390 5' -54.5 NC_004812.1 + 156043 0.7 0.831039
Target:  5'- cGCGCCGcgggacgggcGGGCGUCGCGcggcgCGUCGc -3'
miRNA:   3'- cCGCGGCuu--------CUCGUAGCGCaa---GCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.