Results 21 - 40 of 171 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21390 | 5' | -54.5 | NC_004812.1 | + | 42388 | 0.66 | 0.946892 |
Target: 5'- cGGCGCCGGcguuuuguGGGCAUCGUGggaGg-- -3' miRNA: 3'- -CCGCGGCUu-------CUCGUAGCGCaagCagu -5' |
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21390 | 5' | -54.5 | NC_004812.1 | + | 122389 | 0.66 | 0.951117 |
Target: 5'- aGGCGCCGuugcgcuugccGGAGUAgcUGCGggCGUCc -3' miRNA: 3'- -CCGCGGCu----------UCUCGUa-GCGCaaGCAGu -5' |
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21390 | 5' | -54.5 | NC_004812.1 | + | 36779 | 0.66 | 0.951117 |
Target: 5'- cGgGCCGggGGGCGcgggCGCGggC-UCAg -3' miRNA: 3'- cCgCGGCuuCUCGUa---GCGCaaGcAGU- -5' |
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21390 | 5' | -54.5 | NC_004812.1 | + | 138893 | 0.66 | 0.962422 |
Target: 5'- cGGCGCCGcAGAGCcugcugGUCG-GUcUGUCc -3' miRNA: 3'- -CCGCGGCuUCUCG------UAGCgCAaGCAGu -5' |
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21390 | 5' | -54.5 | NC_004812.1 | + | 74925 | 0.66 | 0.951117 |
Target: 5'- aGGCGCgCGAgcgggucgggGGAGcCGUCGCGcgCcgcgGUCAg -3' miRNA: 3'- -CCGCG-GCU----------UCUC-GUAGCGCaaG----CAGU- -5' |
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21390 | 5' | -54.5 | NC_004812.1 | + | 67100 | 0.66 | 0.962422 |
Target: 5'- cGGCGCgaugcaguCGAAGAGgcUCGUGUugUUGUCGg -3' miRNA: 3'- -CCGCG--------GCUUCUCguAGCGCA--AGCAGU- -5' |
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21390 | 5' | -54.5 | NC_004812.1 | + | 23629 | 0.66 | 0.955111 |
Target: 5'- gGGCGCCcaGAcGGGCGUcCGCGUgacccucgcccUCGUg- -3' miRNA: 3'- -CCGCGG--CUuCUCGUA-GCGCA-----------AGCAgu -5' |
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21390 | 5' | -54.5 | NC_004812.1 | + | 85008 | 0.66 | 0.955111 |
Target: 5'- cGCGCCG-AGAGCGgcuguacgcgCGCGgggcUCGUg- -3' miRNA: 3'- cCGCGGCuUCUCGUa---------GCGCa---AGCAgu -5' |
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21390 | 5' | -54.5 | NC_004812.1 | + | 148933 | 0.66 | 0.961382 |
Target: 5'- cGGCGUCGGcgacgacgguggucGGGGCGcgagaGCGggUCGUCGg -3' miRNA: 3'- -CCGCGGCU--------------UCUCGUag---CGCa-AGCAGU- -5' |
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21390 | 5' | -54.5 | NC_004812.1 | + | 58323 | 0.66 | 0.962422 |
Target: 5'- cGCGCCGggGuGC-UCGuCGaucgCGUCc -3' miRNA: 3'- cCGCGGCuuCuCGuAGC-GCaa--GCAGu -5' |
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21390 | 5' | -54.5 | NC_004812.1 | + | 153743 | 0.66 | 0.945579 |
Target: 5'- cGGUGCCGgcGcgcacggcguccucGGCGUCGCGccgCGUg- -3' miRNA: 3'- -CCGCGGCuuC--------------UCGUAGCGCaa-GCAgu -5' |
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21390 | 5' | -54.5 | NC_004812.1 | + | 134092 | 0.66 | 0.955111 |
Target: 5'- gGGCGCCGA----CGUCGCGgugCGUg- -3' miRNA: 3'- -CCGCGGCUucucGUAGCGCaa-GCAgu -5' |
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21390 | 5' | -54.5 | NC_004812.1 | + | 47771 | 0.66 | 0.951117 |
Target: 5'- cGGCGCUGggG-GCGUCG-GcUCG-CGa -3' miRNA: 3'- -CCGCGGCuuCuCGUAGCgCaAGCaGU- -5' |
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21390 | 5' | -54.5 | NC_004812.1 | + | 145748 | 0.66 | 0.946892 |
Target: 5'- cGgGUCGggGGGC-UCGuCGgUCGUCGc -3' miRNA: 3'- cCgCGGCuuCUCGuAGC-GCaAGCAGU- -5' |
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21390 | 5' | -54.5 | NC_004812.1 | + | 145139 | 0.66 | 0.962422 |
Target: 5'- cGGCggGCUGuacguGuGCGUCGUGUaCGUCAa -3' miRNA: 3'- -CCG--CGGCuu---CuCGUAGCGCAaGCAGU- -5' |
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21390 | 5' | -54.5 | NC_004812.1 | + | 55770 | 0.66 | 0.946892 |
Target: 5'- cGCGCCcugccccuGGGCAgcccCGCGgUCGUCAg -3' miRNA: 3'- cCGCGGcuu-----CUCGUa---GCGCaAGCAGU- -5' |
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21390 | 5' | -54.5 | NC_004812.1 | + | 98619 | 0.66 | 0.942432 |
Target: 5'- gGGCGUCGGuggccAGCGcCGUGUUCGUg- -3' miRNA: 3'- -CCGCGGCUuc---UCGUaGCGCAAGCAgu -5' |
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21390 | 5' | -54.5 | NC_004812.1 | + | 91550 | 0.66 | 0.955111 |
Target: 5'- cGGCgGCCGccGAGac-CGCG-UCGUCGu -3' miRNA: 3'- -CCG-CGGCuuCUCguaGCGCaAGCAGU- -5' |
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21390 | 5' | -54.5 | NC_004812.1 | + | 124678 | 0.66 | 0.958878 |
Target: 5'- uGGCcCCGggGAGCGagcggcCGCGgUCGcUCGu -3' miRNA: 3'- -CCGcGGCuuCUCGUa-----GCGCaAGC-AGU- -5' |
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21390 | 5' | -54.5 | NC_004812.1 | + | 44015 | 0.66 | 0.962422 |
Target: 5'- cGGaGCCGggG-GCGUCGUccgCGUCc -3' miRNA: 3'- -CCgCGGCuuCuCGUAGCGcaaGCAGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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