miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21390 5' -54.5 NC_004812.1 + 69927 0.7 0.822583
Target:  5'- aGGCGCUGggGcuGCGagagaUCGUGUUggcCGUCAa -3'
miRNA:   3'- -CCGCGGCuuCu-CGU-----AGCGCAA---GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 109611 0.71 0.777863
Target:  5'- uGGCGCCccgGGGGCAg-GCGUUCG-CAg -3'
miRNA:   3'- -CCGCGGcu-UCUCGUagCGCAAGCaGU- -5'
21390 5' -54.5 NC_004812.1 + 33685 0.71 0.777863
Target:  5'- cGCGCCucGGgcaccGGCGUCGCGgcCGUCGg -3'
miRNA:   3'- cCGCGGcuUC-----UCGUAGCGCaaGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 122293 0.71 0.786186
Target:  5'- cGGCGCCGGAGGGCcgCcggggggaggcggGCGgcgaGUCGc -3'
miRNA:   3'- -CCGCGGCUUCUCGuaG-------------CGCaag-CAGU- -5'
21390 5' -54.5 NC_004812.1 + 124050 0.71 0.787104
Target:  5'- cGGCGCCGcggccaacggGGGAGCggCGCGUcaUCGaUCc -3'
miRNA:   3'- -CCGCGGC----------UUCUCGuaGCGCA--AGC-AGu -5'
21390 5' -54.5 NC_004812.1 + 55861 0.7 0.796205
Target:  5'- aGGCGCCGcagcAGGGGCGUCGUcaGgugUgGUCGu -3'
miRNA:   3'- -CCGCGGC----UUCUCGUAGCG--Ca--AgCAGU- -5'
21390 5' -54.5 NC_004812.1 + 14419 0.7 0.804269
Target:  5'- aGGCGCCGGAGAGCuucacGUacauguucugcgcCGCGauccgCGUCGc -3'
miRNA:   3'- -CCGCGGCUUCUCG-----UA-------------GCGCaa---GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 60326 0.7 0.805157
Target:  5'- uGGcCGCCGucGAGCAUCGUGaaggugaUGUCGg -3'
miRNA:   3'- -CC-GCGGCuuCUCGUAGCGCaa-----GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 130081 0.7 0.813953
Target:  5'- gGGCG-CGAAGAGCAggCGCGUgaugagggCGUa- -3'
miRNA:   3'- -CCGCgGCUUCUCGUa-GCGCAa-------GCAgu -5'
21390 5' -54.5 NC_004812.1 + 77574 0.71 0.758998
Target:  5'- cGGCGCgGAGGccacgugguaccGGCgGUCGCGggCGUCc -3'
miRNA:   3'- -CCGCGgCUUC------------UCG-UAGCGCaaGCAGu -5'
21390 5' -54.5 NC_004812.1 + 130452 0.71 0.758998
Target:  5'- cGGCGCUGGAGGGCGgccgGCGggCGg-- -3'
miRNA:   3'- -CCGCGGCUUCUCGUag--CGCaaGCagu -5'
21390 5' -54.5 NC_004812.1 + 112776 0.71 0.749393
Target:  5'- cGGCGCCGc-GAGCcgCGCGgcggcuccccCGUCGg -3'
miRNA:   3'- -CCGCGGCuuCUCGuaGCGCaa--------GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 80114 0.8 0.311869
Target:  5'- cGGCcucgGCCGAcAGAGCGUCGCGUaggccggCGUCAa -3'
miRNA:   3'- -CCG----CGGCU-UCUCGUAGCGCAa------GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 52890 0.76 0.505079
Target:  5'- cGGUGCCGAcggugcagggcucgAGGGCGUCGCGcUCGa-- -3'
miRNA:   3'- -CCGCGGCU--------------UCUCGUAGCGCaAGCagu -5'
21390 5' -54.5 NC_004812.1 + 106631 0.75 0.517749
Target:  5'- cGCGCCGAGGAcgcagGCAUCGacaUCGUCAu -3'
miRNA:   3'- cCGCGGCUUCU-----CGUAGCgcaAGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 58984 0.75 0.547443
Target:  5'- cGGCGCCGuccGAGag-CGCGaUCGUCAg -3'
miRNA:   3'- -CCGCGGCuu-CUCguaGCGCaAGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 146346 0.73 0.649175
Target:  5'- cGCGCCGucGGcuGCGUCGCGgcgUUCGUCc -3'
miRNA:   3'- cCGCGGCuuCU--CGUAGCGC---AAGCAGu -5'
21390 5' -54.5 NC_004812.1 + 106522 0.73 0.659401
Target:  5'- gGGCGCCGgcGGccGCggCGCcUUCGUCAc -3'
miRNA:   3'- -CCGCGGCuuCU--CGuaGCGcAAGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 98706 0.73 0.67978
Target:  5'- cGCGCCGggGgcGGCggCGCGgggUCGUUc -3'
miRNA:   3'- cCGCGGCuuC--UCGuaGCGCa--AGCAGu -5'
21390 5' -54.5 NC_004812.1 + 102767 0.72 0.719993
Target:  5'- cGGCGUCGucGAGCcccccCGCGUggucUCGUCGc -3'
miRNA:   3'- -CCGCGGCuuCUCGua---GCGCA----AGCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.