miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21390 5' -54.5 NC_004812.1 + 133274 1.11 0.003564
Target:  5'- gGGCGCCGAAGAGCAUCGCGUUCGUCAu -3'
miRNA:   3'- -CCGCGGCUUCUCGUAGCGCAAGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 136476 0.7 0.831039
Target:  5'- gGGCGCCau-GGGCGaCGCGggccUCGUCu -3'
miRNA:   3'- -CCGCGGcuuCUCGUaGCGCa---AGCAGu -5'
21390 5' -54.5 NC_004812.1 + 141431 0.69 0.839315
Target:  5'- aGGC-CCGGAGGGCggCGCGccacgUGUCGu -3'
miRNA:   3'- -CCGcGGCUUCUCGuaGCGCaa---GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 44015 0.66 0.962422
Target:  5'- cGGaGCCGggG-GCGUCGUccgCGUCc -3'
miRNA:   3'- -CCgCGGCuuCuCGUAGCGcaaGCAGu -5'
21390 5' -54.5 NC_004812.1 + 147026 0.73 0.638936
Target:  5'- gGGCGCUGAgaaAGGGCGUCGaaugcgagGUUCGUUc -3'
miRNA:   3'- -CCGCGGCU---UCUCGUAGCg-------CAAGCAGu -5'
21390 5' -54.5 NC_004812.1 + 45463 0.72 0.719001
Target:  5'- aGGUGCCGGAgggagcgcacggcGAGCAUgGCGgcggcccggCGUCAa -3'
miRNA:   3'- -CCGCGGCUU-------------CUCGUAgCGCaa-------GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 4944 0.71 0.758999
Target:  5'- cGGCGCUGGAGGGCGgccgGCGggCGg-- -3'
miRNA:   3'- -CCGCGGCUUCUCGUag--CGCaaGCagu -5'
21390 5' -54.5 NC_004812.1 + 153194 0.71 0.786186
Target:  5'- cGGCGCCGGAGGGCcgCcggggggaggcggGCGgcgaGUCGc -3'
miRNA:   3'- -CCGCGGCUUCUCGuaG-------------CGCaag-CAGU- -5'
21390 5' -54.5 NC_004812.1 + 89289 0.71 0.787104
Target:  5'- cGGCGCgGAGccccGGCGUCGCGcUUCGcgCAg -3'
miRNA:   3'- -CCGCGgCUUc---UCGUAGCGC-AAGCa-GU- -5'
21390 5' -54.5 NC_004812.1 + 35887 0.7 0.831039
Target:  5'- cGCGCCGggGGGCcgUGCGc-CG-CAg -3'
miRNA:   3'- cCGCGGCuuCUCGuaGCGCaaGCaGU- -5'
21390 5' -54.5 NC_004812.1 + 143640 0.7 0.805158
Target:  5'- cGGCcCCGGgcgcGGAGCG-CGCGUUCGacuUCAa -3'
miRNA:   3'- -CCGcGGCU----UCUCGUaGCGCAAGC---AGU- -5'
21390 5' -54.5 NC_004812.1 + 154951 0.71 0.787104
Target:  5'- cGGCGCCGcggccaacggGGGAGCggCGCGUcaUCGaUCc -3'
miRNA:   3'- -CCGCGGC----------UUCUCGuaGCGCA--AGC-AGu -5'
21390 5' -54.5 NC_004812.1 + 114110 0.75 0.547444
Target:  5'- cGGCGCCGAgcgccAGcGCGUCGCGgaagagUUCGUUg -3'
miRNA:   3'- -CCGCGGCU-----UCuCGUAGCGC------AAGCAGu -5'
21390 5' -54.5 NC_004812.1 + 4573 0.7 0.813953
Target:  5'- gGGCG-CGAAGAGCAggCGCGUgaugagggCGUa- -3'
miRNA:   3'- -CCGCgGCUUCUCGUa-GCGCAa-------GCAgu -5'
21390 5' -54.5 NC_004812.1 + 53555 0.74 0.608216
Target:  5'- gGGCGCCGAggugcuccgGGAGCA-CGCGUacagccgcCGUCGu -3'
miRNA:   3'- -CCGCGGCU---------UCUCGUaGCGCAa-------GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 131067 0.71 0.787104
Target:  5'- aGGCGCCcgcGGAGAGCGUgcaCGCGUgCGg-- -3'
miRNA:   3'- -CCGCGG---CUUCUCGUA---GCGCAaGCagu -5'
21390 5' -54.5 NC_004812.1 + 60270 0.7 0.822583
Target:  5'- gGGCGCCGGu-GGCGUUGCG-UCG-CGa -3'
miRNA:   3'- -CCGCGGCUucUCGUAGCGCaAGCaGU- -5'
21390 5' -54.5 NC_004812.1 + 30535 0.7 0.831039
Target:  5'- cGCGCCGcgggacgggcGGGCGUCGCGcggcgCGUCGc -3'
miRNA:   3'- cCGCGGCuu--------CUCGUAGCGCaa---GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 69821 0.73 0.62869
Target:  5'- gGGgGCCGAGGGGguUCGcCGUccgCGUCc -3'
miRNA:   3'- -CCgCGGCUUCUCguAGC-GCAa--GCAGu -5'
21390 5' -54.5 NC_004812.1 + 125038 0.72 0.729881
Target:  5'- cGCGCCGuucGAcGUcgcggccgagGUCGCGUUCGUCGc -3'
miRNA:   3'- cCGCGGCuu-CU-CG----------UAGCGCAAGCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.