miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21390 5' -54.5 NC_004812.1 + 156183 0.67 0.92763
Target:  5'- gGGCGCgCGcGAGAGCGcCGCGcgCGg-- -3'
miRNA:   3'- -CCGCG-GC-UUCUCGUaGCGCaaGCagu -5'
21390 5' -54.5 NC_004812.1 + 156043 0.7 0.831039
Target:  5'- cGCGCCGcgggacgggcGGGCGUCGCGcggcgCGUCGc -3'
miRNA:   3'- cCGCGGCuu--------CUCGUAGCGCaa---GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 155856 0.67 0.922217
Target:  5'- cGGCGCCGGGaGGCGaggCGCGcgCGgCGg -3'
miRNA:   3'- -CCGCGGCUUcUCGUa--GCGCaaGCaGU- -5'
21390 5' -54.5 NC_004812.1 + 155684 0.66 0.942432
Target:  5'- aGCGCCGgcGGGCucggCGCGcgCGa-- -3'
miRNA:   3'- cCGCGGCuuCUCGua--GCGCaaGCagu -5'
21390 5' -54.5 NC_004812.1 + 154951 0.71 0.787104
Target:  5'- cGGCGCCGcggccaacggGGGAGCggCGCGUcaUCGaUCc -3'
miRNA:   3'- -CCGCGGC----------UUCUCGuaGCGCA--AGC-AGu -5'
21390 5' -54.5 NC_004812.1 + 154037 0.68 0.910675
Target:  5'- cGGCGUCGGAG-GCGggGUcgUCGUCGa -3'
miRNA:   3'- -CCGCGGCUUCuCGUagCGcaAGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 153743 0.66 0.945579
Target:  5'- cGGUGCCGgcGcgcacggcguccucGGCGUCGCGccgCGUg- -3'
miRNA:   3'- -CCGCGGCuuC--------------UCGUAGCGCaa-GCAgu -5'
21390 5' -54.5 NC_004812.1 + 153194 0.71 0.786186
Target:  5'- cGGCGCCGGAGGGCcgCcggggggaggcggGCGgcgaGUCGc -3'
miRNA:   3'- -CCGCGGCUUCUCGuaG-------------CGCaag-CAGU- -5'
21390 5' -54.5 NC_004812.1 + 152810 0.68 0.904548
Target:  5'- cGGCGCCGAGGccgcCGUCGCcgccGUgcgcgcCGUCAg -3'
miRNA:   3'- -CCGCGGCUUCuc--GUAGCG----CAa-----GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 148933 0.66 0.961382
Target:  5'- cGGCGUCGGcgacgacgguggucGGGGCGcgagaGCGggUCGUCGg -3'
miRNA:   3'- -CCGCGGCU--------------UCUCGUag---CGCa-AGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 147910 0.67 0.92763
Target:  5'- gGGCG-CGGAGGGCGUCcCGc-CGUCGc -3'
miRNA:   3'- -CCGCgGCUUCUCGUAGcGCaaGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 147026 0.73 0.638936
Target:  5'- gGGCGCUGAgaaAGGGCGUCGaaugcgagGUUCGUUc -3'
miRNA:   3'- -CCGCGGCU---UCUCGUAGCg-------CAAGCAGu -5'
21390 5' -54.5 NC_004812.1 + 146346 0.73 0.649175
Target:  5'- cGCGCCGucGGcuGCGUCGCGgcgUUCGUCc -3'
miRNA:   3'- cCGCGGCuuCU--CGUAGCGC---AAGCAGu -5'
21390 5' -54.5 NC_004812.1 + 145748 0.66 0.946892
Target:  5'- cGgGUCGggGGGC-UCGuCGgUCGUCGc -3'
miRNA:   3'- cCgCGGCuuCUCGuAGC-GCaAGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 145139 0.66 0.962422
Target:  5'- cGGCggGCUGuacguGuGCGUCGUGUaCGUCAa -3'
miRNA:   3'- -CCG--CGGCuu---CuCGUAGCGCAaGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 143985 0.69 0.839314
Target:  5'- aGGCGCCGAcc-GC-UCGCGgcggCGUCu -3'
miRNA:   3'- -CCGCGGCUucuCGuAGCGCaa--GCAGu -5'
21390 5' -54.5 NC_004812.1 + 143640 0.7 0.805158
Target:  5'- cGGCcCCGGgcgcGGAGCG-CGCGUUCGacuUCAa -3'
miRNA:   3'- -CCGcGGCU----UCUCGUaGCGCAAGC---AGU- -5'
21390 5' -54.5 NC_004812.1 + 143049 0.67 0.916566
Target:  5'- uGGCGCgCGAgggGGAGUuuGUCGUGUUC-UCc -3'
miRNA:   3'- -CCGCG-GCU---UCUCG--UAGCGCAAGcAGu -5'
21390 5' -54.5 NC_004812.1 + 142896 0.69 0.855292
Target:  5'- cGCuGaCCGAGGAGCAcaUGCaGUUCGUCGa -3'
miRNA:   3'- cCG-C-GGCUUCUCGUa-GCG-CAAGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 142563 0.68 0.884771
Target:  5'- uGGCGCUGggGccgugGGCccugGUCGCGggagUgGUCAu -3'
miRNA:   3'- -CCGCGGCuuC-----UCG----UAGCGCa---AgCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.