miRNA display CGI


Results 41 - 60 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21390 5' -54.5 NC_004812.1 + 42850 0.67 0.937737
Target:  5'- uGGCGCCGucG-GCcaggCGCGccagCGUCAc -3'
miRNA:   3'- -CCGCGGCuuCuCGua--GCGCaa--GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 44015 0.66 0.962422
Target:  5'- cGGaGCCGggG-GCGUCGUccgCGUCc -3'
miRNA:   3'- -CCgCGGCuuCuCGUAGCGcaaGCAGu -5'
21390 5' -54.5 NC_004812.1 + 44125 0.68 0.877725
Target:  5'- gGGUcCgGggGAGCGcgCGCGUUCgGUCGc -3'
miRNA:   3'- -CCGcGgCuuCUCGUa-GCGCAAG-CAGU- -5'
21390 5' -54.5 NC_004812.1 + 45463 0.72 0.719001
Target:  5'- aGGUGCCGGAgggagcgcacggcGAGCAUgGCGgcggcccggCGUCAa -3'
miRNA:   3'- -CCGCGGCUU-------------CUCGUAgCGCaa-------GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 46233 0.68 0.898186
Target:  5'- gGGCGCaGAAGAGCGcgaagaUCGUGUccUCGaUCu -3'
miRNA:   3'- -CCGCGgCUUCUCGU------AGCGCA--AGC-AGu -5'
21390 5' -54.5 NC_004812.1 + 46292 0.66 0.955111
Target:  5'- gGGCgGCCGGAGgccgcggcgGGCcgCGCGggCGaCAg -3'
miRNA:   3'- -CCG-CGGCUUC---------UCGuaGCGCaaGCaGU- -5'
21390 5' -54.5 NC_004812.1 + 47771 0.66 0.951117
Target:  5'- cGGCGCUGggG-GCGUCG-GcUCG-CGa -3'
miRNA:   3'- -CCGCGGCuuCuCGUAGCgCaAGCaGU- -5'
21390 5' -54.5 NC_004812.1 + 48946 0.68 0.884771
Target:  5'- uGGCGCCGAcgcggcGAGCcUCGaCGgggcCGUCGa -3'
miRNA:   3'- -CCGCGGCUu-----CUCGuAGC-GCaa--GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 51226 0.68 0.910675
Target:  5'- cGGCGCCagcGAGAcCAUCGCGgcgcUgGUCGg -3'
miRNA:   3'- -CCGCGGc--UUCUcGUAGCGCa---AgCAGU- -5'
21390 5' -54.5 NC_004812.1 + 51540 0.68 0.877725
Target:  5'- cGGCGCCGggGGGCca-GUGUgCGcCc -3'
miRNA:   3'- -CCGCGGCuuCUCGuagCGCAaGCaGu -5'
21390 5' -54.5 NC_004812.1 + 52121 0.68 0.877725
Target:  5'- cGgGCCGAucGGCAUCGCG-UCGcCGg -3'
miRNA:   3'- cCgCGGCUucUCGUAGCGCaAGCaGU- -5'
21390 5' -54.5 NC_004812.1 + 52890 0.76 0.505079
Target:  5'- cGGUGCCGAcggugcagggcucgAGGGCGUCGCGcUCGa-- -3'
miRNA:   3'- -CCGCGGCU--------------UCUCGUAGCGCaAGCagu -5'
21390 5' -54.5 NC_004812.1 + 53555 0.74 0.608216
Target:  5'- gGGCGCCGAggugcuccgGGAGCA-CGCGUacagccgcCGUCGu -3'
miRNA:   3'- -CCGCGGCU---------UCUCGUaGCGCAa-------GCAGU- -5'
21390 5' -54.5 NC_004812.1 + 53796 0.66 0.951117
Target:  5'- cGCGCCGccccguGGAGagGUCGCGcUCGUa- -3'
miRNA:   3'- cCGCGGCu-----UCUCg-UAGCGCaAGCAgu -5'
21390 5' -54.5 NC_004812.1 + 54434 0.67 0.922217
Target:  5'- uGGCGCCGGucggcggcGGGCAgacguagaaggUCGCGUcgcCGUCc -3'
miRNA:   3'- -CCGCGGCUu-------CUCGU-----------AGCGCAa--GCAGu -5'
21390 5' -54.5 NC_004812.1 + 55265 0.68 0.88057
Target:  5'- cGGUGuuGggGGGCugggccaggcuguggGUCGCGUg-GUCGa -3'
miRNA:   3'- -CCGCggCuuCUCG---------------UAGCGCAagCAGU- -5'
21390 5' -54.5 NC_004812.1 + 55770 0.66 0.946892
Target:  5'- cGCGCCcugccccuGGGCAgcccCGCGgUCGUCAg -3'
miRNA:   3'- cCGCGGcuu-----CUCGUa---GCGCaAGCAGU- -5'
21390 5' -54.5 NC_004812.1 + 55861 0.7 0.796205
Target:  5'- aGGCGCCGcagcAGGGGCGUCGUcaGgugUgGUCGu -3'
miRNA:   3'- -CCGCGGC----UUCUCGUAGCG--Ca--AgCAGU- -5'
21390 5' -54.5 NC_004812.1 + 56022 0.68 0.884771
Target:  5'- cGGCgGCCGAAGAGCGccagcUCGaCGgcCGcCAc -3'
miRNA:   3'- -CCG-CGGCUUCUCGU-----AGC-GCaaGCaGU- -5'
21390 5' -54.5 NC_004812.1 + 56439 0.66 0.958878
Target:  5'- aGGCGCCGGGcGAuCGUCGCccccugGUUggcCGUCAc -3'
miRNA:   3'- -CCGCGGCUU-CUcGUAGCG------CAA---GCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.