miRNA display CGI


Results 41 - 60 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 3' -55.7 NC_004812.1 + 2936 0.66 0.920313
Target:  5'- -uCCUcggUCAcccUCGGcGGGCGCaccgugCGCGCCCu -3'
miRNA:   3'- cuGGA---AGU---AGCCuUCCGUG------GCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 55457 0.66 0.920313
Target:  5'- cGGCCgUCAggUCGcaGAAGcGCACgCGCGCCg -3'
miRNA:   3'- -CUGGaAGU--AGC--CUUC-CGUG-GCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 47204 0.66 0.914596
Target:  5'- gGACCU------GggGGCGCgGCGCCCc -3'
miRNA:   3'- -CUGGAaguagcCuuCCGUGgCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 4854 0.66 0.908642
Target:  5'- gGGCCg-----GGGAGGgGCCGCgGCCCg -3'
miRNA:   3'- -CUGGaaguagCCUUCCgUGGCG-UGGG- -5'
21392 3' -55.7 NC_004812.1 + 18124 0.66 0.902454
Target:  5'- cGGCCgcaCGugcUCGGAgaGGGCGgCGC-CCCg -3'
miRNA:   3'- -CUGGaa-GU---AGCCU--UCCGUgGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 52159 0.66 0.908642
Target:  5'- uGACCUUgGcgcUCaGcAGGGCGCuCGUGCCCu -3'
miRNA:   3'- -CUGGAAgU---AGcC-UUCCGUG-GCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 8422 0.66 0.908642
Target:  5'- cGGCCguac-CGGAGGcCGCCGCcCCCg -3'
miRNA:   3'- -CUGGaaguaGCCUUCcGUGGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 61272 0.66 0.920313
Target:  5'- -cCCUccUCGUCGGAuccuggaugGGGCgugcggGCCGCGCUUc -3'
miRNA:   3'- cuGGA--AGUAGCCU---------UCCG------UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 55720 0.66 0.925792
Target:  5'- cGCCccgCcUCGGggGcCGCgGCGCCCu -3'
miRNA:   3'- cUGGaa-GuAGCCuuCcGUGgCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 77752 0.66 0.926327
Target:  5'- cGGCCUccgcccuccccgggcUCcUCGGggGaCACCGCcgccacggucagggGCCCg -3'
miRNA:   3'- -CUGGA---------------AGuAGCCuuCcGUGGCG--------------UGGG- -5'
21392 3' -55.7 NC_004812.1 + 39321 0.66 0.925792
Target:  5'- cGugCagCAUCuGGucGGCcguGCCGCGCUCg -3'
miRNA:   3'- -CugGaaGUAG-CCuuCCG---UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 98401 0.66 0.914596
Target:  5'- cGGCCg----CGGGGcGGCGCCGCAgCg -3'
miRNA:   3'- -CUGGaaguaGCCUU-CCGUGGCGUgGg -5'
21392 3' -55.7 NC_004812.1 + 109317 0.66 0.920313
Target:  5'- cGCCggCGgcgcUGGAGgcGGCGCCGCGCUa -3'
miRNA:   3'- cUGGaaGUa---GCCUU--CCGUGGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 114172 0.66 0.920313
Target:  5'- cGGCCUUCcgCcggaGGAAGGgGCCGgACa- -3'
miRNA:   3'- -CUGGAAGuaG----CCUUCCgUGGCgUGgg -5'
21392 3' -55.7 NC_004812.1 + 109590 0.66 0.908642
Target:  5'- uGCCcgUCuAUCGGguGGcCAUgGCGCCCc -3'
miRNA:   3'- cUGGa-AG-UAGCCuuCC-GUGgCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 72966 0.66 0.908642
Target:  5'- cGACCUcUCGcaGGgcGGCGuCgGCGCCCc -3'
miRNA:   3'- -CUGGA-AGUagCCuuCCGU-GgCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 41414 0.66 0.904957
Target:  5'- cGCCUacuUCGUgugCGGggGGUgcguuuacuccgucuGCCGCcCCCg -3'
miRNA:   3'- cUGGA---AGUA---GCCuuCCG---------------UGGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 50471 0.66 0.906195
Target:  5'- cGGCCU-CggCGGGcgcguguggacgccGGGCGCCGaggcgcuCACCCg -3'
miRNA:   3'- -CUGGAaGuaGCCU--------------UCCGUGGC-------GUGGG- -5'
21392 3' -55.7 NC_004812.1 + 1754 0.66 0.912834
Target:  5'- gGAUCUccgCAugcuaaugcgucccUCGGggGGCcgGCCGCuccGCCCc -3'
miRNA:   3'- -CUGGAa--GU--------------AGCCuuCCG--UGGCG---UGGG- -5'
21392 3' -55.7 NC_004812.1 + 79453 0.66 0.902454
Target:  5'- cGCCUUCcgcgcggCGGcGGGgGCC-CGCCCg -3'
miRNA:   3'- cUGGAAGua-----GCCuUCCgUGGcGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.