miRNA display CGI


Results 21 - 40 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 3' -55.7 NC_004812.1 + 40206 0.66 0.902454
Target:  5'- gGGCCcgCAgCGGAucGGCGaccgcCCGCGCCUg -3'
miRNA:   3'- -CUGGaaGUaGCCUu-CCGU-----GGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 119400 0.66 0.914596
Target:  5'- gGGCCccccgCGUgccCGG-GGGCGCCGCuCCCc -3'
miRNA:   3'- -CUGGaa---GUA---GCCuUCCGUGGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 24489 0.66 0.899913
Target:  5'- cGGCCgcuccuggaCGGggGGCccCCGCGCCg -3'
miRNA:   3'- -CUGGaagua----GCCuuCCGu-GGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 1754 0.66 0.912834
Target:  5'- gGAUCUccgCAugcuaaugcgucccUCGGggGGCcgGCCGCuccGCCCc -3'
miRNA:   3'- -CUGGAa--GU--------------AGCCuuCCG--UGGCG---UGGG- -5'
21392 3' -55.7 NC_004812.1 + 114172 0.66 0.920313
Target:  5'- cGGCCUUCcgCcggaGGAAGGgGCCGgACa- -3'
miRNA:   3'- -CUGGAAGuaG----CCUUCCgUGGCgUGgg -5'
21392 3' -55.7 NC_004812.1 + 41414 0.66 0.904957
Target:  5'- cGCCUacuUCGUgugCGGggGGUgcguuuacuccgucuGCCGCcCCCg -3'
miRNA:   3'- cUGGA---AGUA---GCCuuCCG---------------UGGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 154156 0.66 0.920313
Target:  5'- gGACUUccgCcgCGGcGAGGCgcacucgcACCGCGCCUg -3'
miRNA:   3'- -CUGGAa--GuaGCC-UUCCG--------UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 52159 0.66 0.908642
Target:  5'- uGACCUUgGcgcUCaGcAGGGCGCuCGUGCCCu -3'
miRNA:   3'- -CUGGAAgU---AGcC-UUCCGUG-GCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 61272 0.66 0.920313
Target:  5'- -cCCUccUCGUCGGAuccuggaugGGGCgugcggGCCGCGCUUc -3'
miRNA:   3'- cuGGA--AGUAGCCU---------UCCG------UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 47204 0.66 0.914596
Target:  5'- gGACCU------GggGGCGCgGCGCCCc -3'
miRNA:   3'- -CUGGAaguagcCuuCCGUGgCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 39321 0.66 0.925792
Target:  5'- cGugCagCAUCuGGucGGCcguGCCGCGCUCg -3'
miRNA:   3'- -CugGaaGUAG-CCuuCCG---UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 90679 0.66 0.931033
Target:  5'- -gUCUUgGUagaugGGGAGGCGCUugagcaGCACCCa -3'
miRNA:   3'- cuGGAAgUAg----CCUUCCGUGG------CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 55457 0.66 0.920313
Target:  5'- cGGCCgUCAggUCGcaGAAGcGCACgCGCGCCg -3'
miRNA:   3'- -CUGGaAGU--AGC--CUUC-CGUG-GCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 109702 0.66 0.902454
Target:  5'- cGCCgcgg-CGGc-GGcCGCCGCGCCCg -3'
miRNA:   3'- cUGGaaguaGCCuuCC-GUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 109317 0.66 0.920313
Target:  5'- cGCCggCGgcgcUGGAGgcGGCGCCGCGCUa -3'
miRNA:   3'- cUGGaaGUa---GCCUU--CCGUGGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 49015 0.66 0.925792
Target:  5'- cGGCCgggccCAcgCGGAcgAGGUcaACCGCGCCg -3'
miRNA:   3'- -CUGGaa---GUa-GCCU--UCCG--UGGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 122044 0.66 0.902454
Target:  5'- gGACUUgggCGcCGGGcgggacuuGGGCGCCGgGCCUg -3'
miRNA:   3'- -CUGGAa--GUaGCCU--------UCCGUGGCgUGGG- -5'
21392 3' -55.7 NC_004812.1 + 148343 0.66 0.931033
Target:  5'- ---aUUCGUCGGccGGCcCCcgGCGCCCc -3'
miRNA:   3'- cuggAAGUAGCCuuCCGuGG--CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 141931 0.66 0.929486
Target:  5'- aGCCUgcaggCcgCGGGguggcacggcccgaAGGCGCCguucacgaGCACCCu -3'
miRNA:   3'- cUGGAa----GuaGCCU--------------UCCGUGG--------CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 20304 0.66 0.914596
Target:  5'- cGCCggcgCAgcgcgCGcGcAGGCACCGCcCCCa -3'
miRNA:   3'- cUGGaa--GUa----GC-CuUCCGUGGCGuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.