miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 3' -55.7 NC_004812.1 + 50471 0.66 0.906195
Target:  5'- cGGCCU-CggCGGGcgcguguggacgccGGGCGCCGaggcgcuCACCCg -3'
miRNA:   3'- -CUGGAaGuaGCCU--------------UCCGUGGC-------GUGGG- -5'
21392 3' -55.7 NC_004812.1 + 140952 0.66 0.914596
Target:  5'- uGAC--UCAUCGGGgaggaGGGUcaaCGCACCCu -3'
miRNA:   3'- -CUGgaAGUAGCCU-----UCCGug-GCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 41414 0.66 0.904957
Target:  5'- cGCCUacuUCGUgugCGGggGGUgcguuuacuccgucuGCCGCcCCCg -3'
miRNA:   3'- cUGGA---AGUA---GCCuuCCG---------------UGGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 148343 0.66 0.931033
Target:  5'- ---aUUCGUCGGccGGCcCCcgGCGCCCc -3'
miRNA:   3'- cuggAAGUAGCCuuCCGuGG--CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 8422 0.66 0.908642
Target:  5'- cGGCCguac-CGGAGGcCGCCGCcCCCg -3'
miRNA:   3'- -CUGGaaguaGCCUUCcGUGGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 4854 0.66 0.908642
Target:  5'- gGGCCg-----GGGAGGgGCCGCgGCCCg -3'
miRNA:   3'- -CUGGaaguagCCUUCCgUGGCG-UGGG- -5'
21392 3' -55.7 NC_004812.1 + 109590 0.66 0.908642
Target:  5'- uGCCcgUCuAUCGGguGGcCAUgGCGCCCc -3'
miRNA:   3'- cUGGa-AG-UAGCCuuCC-GUGgCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 52159 0.66 0.908642
Target:  5'- uGACCUUgGcgcUCaGcAGGGCGCuCGUGCCCu -3'
miRNA:   3'- -CUGGAAgU---AGcC-UUCCGUG-GCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 100904 0.66 0.902454
Target:  5'- cGCCgagCG-CGGGugcAGGCG-CGCGCCCa -3'
miRNA:   3'- cUGGaa-GUaGCCU---UCCGUgGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 79453 0.66 0.902454
Target:  5'- cGCCUUCcgcgcggCGGcGGGgGCC-CGCCCg -3'
miRNA:   3'- cUGGAAGua-----GCCuUCCgUGGcGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 72966 0.66 0.908642
Target:  5'- cGACCUcUCGcaGGgcGGCGuCgGCGCCCc -3'
miRNA:   3'- -CUGGA-AGUagCCuuCCGU-GgCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 126207 0.66 0.902454
Target:  5'- cGGCCUccUCGgcgCGGcagcccGGGCGCCGgcccCGCCCc -3'
miRNA:   3'- -CUGGA--AGUa--GCCu-----UCCGUGGC----GUGGG- -5'
21392 3' -55.7 NC_004812.1 + 1754 0.66 0.912834
Target:  5'- gGAUCUccgCAugcuaaugcgucccUCGGggGGCcgGCCGCuccGCCCc -3'
miRNA:   3'- -CUGGAa--GU--------------AGCCuuCCG--UGGCG---UGGG- -5'
21392 3' -55.7 NC_004812.1 + 52294 0.66 0.908642
Target:  5'- cGCCgccccCGG-AGGCGCCGUcCCCg -3'
miRNA:   3'- cUGGaaguaGCCuUCCGUGGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 44498 0.66 0.908642
Target:  5'- aGCCcgaCGUCGcGAGGaGgGCCGaCACCCg -3'
miRNA:   3'- cUGGaa-GUAGC-CUUC-CgUGGC-GUGGG- -5'
21392 3' -55.7 NC_004812.1 + 119344 0.66 0.914596
Target:  5'- uGCCcgCGUCccuGGcGGGCGgCGCGCCUg -3'
miRNA:   3'- cUGGaaGUAG---CCuUCCGUgGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 40206 0.66 0.902454
Target:  5'- gGGCCcgCAgCGGAucGGCGaccgcCCGCGCCUg -3'
miRNA:   3'- -CUGGaaGUaGCCUu-CCGU-----GGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 122044 0.66 0.902454
Target:  5'- gGACUUgggCGcCGGGcgggacuuGGGCGCCGgGCCUg -3'
miRNA:   3'- -CUGGAa--GUaGCCU--------UCCGUGGCgUGGG- -5'
21392 3' -55.7 NC_004812.1 + 24489 0.66 0.899913
Target:  5'- cGGCCgcuccuggaCGGggGGCccCCGCGCCg -3'
miRNA:   3'- -CUGGaagua----GCCuuCCGu-GGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 109702 0.66 0.902454
Target:  5'- cGCCgcgg-CGGc-GGcCGCCGCGCCCg -3'
miRNA:   3'- cUGGaaguaGCCuuCC-GUGGCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.