miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 3' -55.7 NC_004812.1 + 325 0.68 0.84491
Target:  5'- aACCagcaCGUCGGGAGGUGCguccaCGCGCUCg -3'
miRNA:   3'- cUGGaa--GUAGCCUUCCGUG-----GCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 418 0.69 0.783512
Target:  5'- aGGCCUUCcgCGcgcGGCGCucucgcgCGCGCCCg -3'
miRNA:   3'- -CUGGAAGuaGCcuuCCGUG-------GCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 699 0.66 0.902454
Target:  5'- cGGCCUccUCGgcgCGGcagcccGGGCGCCGgcccCGCCCc -3'
miRNA:   3'- -CUGGA--AGUa--GCCu-----UCCGUGGC----GUGGG- -5'
21392 3' -55.7 NC_004812.1 + 1003 0.72 0.626177
Target:  5'- aGGCCUgcc-CGGccGGgGCCGCGCCCc -3'
miRNA:   3'- -CUGGAaguaGCCuuCCgUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 1656 0.67 0.87541
Target:  5'- cGCCgcuccccCGUUGGccgcGGCGCCGCgGCCCg -3'
miRNA:   3'- cUGGaa-----GUAGCCuu--CCGUGGCG-UGGG- -5'
21392 3' -55.7 NC_004812.1 + 1754 0.66 0.912834
Target:  5'- gGAUCUccgCAugcuaaugcgucccUCGGggGGCcgGCCGCuccGCCCc -3'
miRNA:   3'- -CUGGAa--GU--------------AGCCuuCCG--UGGCG---UGGG- -5'
21392 3' -55.7 NC_004812.1 + 1798 0.68 0.82848
Target:  5'- cGCgUgCAUCGGGccccGGCugCGCGCCUc -3'
miRNA:   3'- cUGgAaGUAGCCUu---CCGugGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 1870 0.72 0.640479
Target:  5'- gGGCCUcCAUUGGcccGGGCGCCcgggccccgcccgcgGCACCCc -3'
miRNA:   3'- -CUGGAaGUAGCCu--UCCGUGG---------------CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 2037 0.74 0.496306
Target:  5'- gGGCCUcggUCGgcggCGGggGGCGCgggggagggggCGCGCCCc -3'
miRNA:   3'- -CUGGA---AGUa---GCCuuCCGUG-----------GCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 2841 0.74 0.535299
Target:  5'- cGGCCacUCcUCGGggGGCACgGCGUCCa -3'
miRNA:   3'- -CUGGa-AGuAGCCuuCCGUGgCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 2936 0.66 0.920313
Target:  5'- -uCCUcggUCAcccUCGGcGGGCGCaccgugCGCGCCCu -3'
miRNA:   3'- cuGGA---AGU---AGCCuUCCGUG------GCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 3232 0.7 0.727183
Target:  5'- cACCUUCcaccCGGcgcccgccaGGGGCGcCCGCGCCCc -3'
miRNA:   3'- cUGGAAGua--GCC---------UUCCGU-GGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 3385 0.68 0.836788
Target:  5'- aGGCCUcgagggCGgcggCGGAGGGCGCCgGCguguggcuggGCCCc -3'
miRNA:   3'- -CUGGAa-----GUa---GCCUUCCGUGG-CG----------UGGG- -5'
21392 3' -55.7 NC_004812.1 + 4130 0.71 0.70635
Target:  5'- gGGCCcUCGUCGGAgagggcggccgccAGGCGgCGCugCg -3'
miRNA:   3'- -CUGGaAGUAGCCU-------------UCCGUgGCGugGg -5'
21392 3' -55.7 NC_004812.1 + 4827 0.68 0.860571
Target:  5'- aGGCC-UCGUCGGcguccaGGGGCACgGC-CCg -3'
miRNA:   3'- -CUGGaAGUAGCC------UUCCGUGgCGuGGg -5'
21392 3' -55.7 NC_004812.1 + 4854 0.66 0.908642
Target:  5'- gGGCCg-----GGGAGGgGCCGCgGCCCg -3'
miRNA:   3'- -CUGGaaguagCCUUCCgUGGCG-UGGG- -5'
21392 3' -55.7 NC_004812.1 + 5041 0.79 0.2703
Target:  5'- gGGCCgggggCG-CGcGAGGGCGCCGCGCCCc -3'
miRNA:   3'- -CUGGaa---GUaGC-CUUCCGUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 5727 0.69 0.811338
Target:  5'- uGCCgcgggaGGAGGGCGCCGggcgcCGCCCa -3'
miRNA:   3'- cUGGaaguagCCUUCCGUGGC-----GUGGG- -5'
21392 3' -55.7 NC_004812.1 + 6901 0.67 0.882507
Target:  5'- uGugUgguggUC-UCGGGGcGCGCUGCGCCCg -3'
miRNA:   3'- -CugGa----AGuAGCCUUcCGUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 8218 0.67 0.887344
Target:  5'- gGGCCcgCGUCGGAcgcgcccggcggccGGGCcggggguCCGCcCCCg -3'
miRNA:   3'- -CUGGaaGUAGCCU--------------UCCGu------GGCGuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.