miRNA display CGI


Results 21 - 40 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 3' -55.7 NC_004812.1 + 8422 0.66 0.908642
Target:  5'- cGGCCguac-CGGAGGcCGCCGCcCCCg -3'
miRNA:   3'- -CUGGaaguaGCCUUCcGUGGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 9904 0.71 0.656808
Target:  5'- cGCUUUCugGUCGGcGAGGCGUgGCGCCCg -3'
miRNA:   3'- cUGGAAG--UAGCC-UUCCGUGgCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 10789 0.66 0.902454
Target:  5'- cGGCCUUCGcUCcGgcGGgGCCGCACg- -3'
miRNA:   3'- -CUGGAAGU-AGcCuuCCgUGGCGUGgg -5'
21392 3' -55.7 NC_004812.1 + 11017 0.67 0.888706
Target:  5'- cGCCUgcaccaagacgUCGUCGuuuucGGGCGCCGCcgguggcGCCCg -3'
miRNA:   3'- cUGGA-----------AGUAGCcu---UCCGUGGCG-------UGGG- -5'
21392 3' -55.7 NC_004812.1 + 12118 0.72 0.630263
Target:  5'- -uCCggCGUCGGGGggguugggggcgcgcGGCGCCGgGCCCg -3'
miRNA:   3'- cuGGaaGUAGCCUU---------------CCGUGGCgUGGG- -5'
21392 3' -55.7 NC_004812.1 + 12358 0.68 0.852056
Target:  5'- cACCUUgG-CGGggGGCgcgcccgGCCGCGCggCCg -3'
miRNA:   3'- cUGGAAgUaGCCuuCCG-------UGGCGUG--GG- -5'
21392 3' -55.7 NC_004812.1 + 13287 0.66 0.925792
Target:  5'- aGGCCU-CGgcgCGGcGGGGCguccgcgucuccGCCGCGCCg -3'
miRNA:   3'- -CUGGAaGUa--GCC-UUCCG------------UGGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 15301 0.67 0.882507
Target:  5'- cGCCUcaCGUCGGggGGguCCGUcuucuGCuCCa -3'
miRNA:   3'- cUGGAa-GUAGCCuuCCguGGCG-----UG-GG- -5'
21392 3' -55.7 NC_004812.1 + 15999 0.75 0.477293
Target:  5'- cACCggugcaGGAGGGCGCCGgCGCCCa -3'
miRNA:   3'- cUGGaaguagCCUUCCGUGGC-GUGGG- -5'
21392 3' -55.7 NC_004812.1 + 16747 0.7 0.746691
Target:  5'- gGGCCUggggcucaGUCGGggGGCGCgGgGgCCg -3'
miRNA:   3'- -CUGGAag------UAGCCuuCCGUGgCgUgGG- -5'
21392 3' -55.7 NC_004812.1 + 17280 0.67 0.871047
Target:  5'- cGCCUUCGugaaaaucUCGGcguGGCucgccgcccucggccGCCGCACCUc -3'
miRNA:   3'- cUGGAAGU--------AGCCuu-CCG---------------UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 17595 0.68 0.82848
Target:  5'- cGGCUgggCGUCGGAGGaCuuCCGCGCCg -3'
miRNA:   3'- -CUGGaa-GUAGCCUUCcGu-GGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 17884 0.67 0.87541
Target:  5'- cGGCCggCA-CGccgcGGGCccGCCGCGCCCg -3'
miRNA:   3'- -CUGGaaGUaGCcu--UCCG--UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 18124 0.66 0.902454
Target:  5'- cGGCCgcaCGugcUCGGAgaGGGCGgCGC-CCCg -3'
miRNA:   3'- -CUGGaa-GU---AGCCU--UCCGUgGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 18351 0.66 0.914596
Target:  5'- -gUCgaCAUCGGccaccggcGGCGCCGgGCCCg -3'
miRNA:   3'- cuGGaaGUAGCCuu------CCGUGGCgUGGG- -5'
21392 3' -55.7 NC_004812.1 + 18443 0.69 0.783512
Target:  5'- gGGCCg-CGUCcgguggcgcggcgGGggGGCGcggccCCGCGCCCg -3'
miRNA:   3'- -CUGGaaGUAG-------------CCuuCCGU-----GGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 18710 0.69 0.784432
Target:  5'- aGCCgcaguagcUCcgCGGcgcuGGGGCGCCGCGCgCCa -3'
miRNA:   3'- cUGGa-------AGuaGCC----UUCCGUGGCGUG-GG- -5'
21392 3' -55.7 NC_004812.1 + 19144 0.7 0.765798
Target:  5'- cGGCCagcgCcgCGGggGGCGCggcggcgGCGCCCc -3'
miRNA:   3'- -CUGGaa--GuaGCCuuCCGUGg------CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 20304 0.66 0.914596
Target:  5'- cGCCggcgCAgcgcgCGcGcAGGCACCGCcCCCa -3'
miRNA:   3'- cUGGaa--GUa----GC-CuUCCGUGGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 21353 0.67 0.894062
Target:  5'- aGugCUUgUAUCGGAaccGGGCGuagacgcgcgagcuCCGCGCCg -3'
miRNA:   3'- -CugGAA-GUAGCCU---UCCGU--------------GGCGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.