miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 3' -55.7 NC_004812.1 + 9904 0.71 0.656808
Target:  5'- cGCUUUCugGUCGGcGAGGCGUgGCGCCCg -3'
miRNA:   3'- cUGGAAG--UAGCC-UUCCGUGgCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 49524 0.73 0.585432
Target:  5'- cGACCccCGUCGGcGAGGuCAUCGCcGCCCa -3'
miRNA:   3'- -CUGGaaGUAGCC-UUCC-GUGGCG-UGGG- -5'
21392 3' -55.7 NC_004812.1 + 83994 0.73 0.585432
Target:  5'- cGGCCcUCcUUGGggGGCGUCGCgGCCCg -3'
miRNA:   3'- -CUGGaAGuAGCCuuCCGUGGCG-UGGG- -5'
21392 3' -55.7 NC_004812.1 + 80828 0.73 0.592537
Target:  5'- cGACCga-GUCGG-GGGCACCGUgguggugccgagcgGCCCc -3'
miRNA:   3'- -CUGGaagUAGCCuUCCGUGGCG--------------UGGG- -5'
21392 3' -55.7 NC_004812.1 + 117352 0.72 0.605766
Target:  5'- cGGCCgccgacgCGGuGGGGCgGCCGCGCCCg -3'
miRNA:   3'- -CUGGaagua--GCC-UUCCG-UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 126512 0.72 0.626177
Target:  5'- aGGCCUgcc-CGGccGGgGCCGCGCCCc -3'
miRNA:   3'- -CUGGAaguaGCCuuCCgUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 70101 0.72 0.626177
Target:  5'- cGAUgUUCAgcaGGGAGGCGCCGgGCgCg -3'
miRNA:   3'- -CUGgAAGUag-CCUUCCGUGGCgUGgG- -5'
21392 3' -55.7 NC_004812.1 + 12118 0.72 0.630263
Target:  5'- -uCCggCGUCGGGGggguugggggcgcgcGGCGCCGgGCCCg -3'
miRNA:   3'- cuGGaaGUAGCCUU---------------CCGUGGCgUGGG- -5'
21392 3' -55.7 NC_004812.1 + 1870 0.72 0.640479
Target:  5'- gGGCCUcCAUUGGcccGGGCGCCcgggccccgcccgcgGCACCCc -3'
miRNA:   3'- -CUGGAaGUAGCCu--UCCGUGG---------------CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 102165 0.73 0.575313
Target:  5'- cGGCCccgUCGUCGG-GGGC-CCGCggcggGCCCa -3'
miRNA:   3'- -CUGGa--AGUAGCCuUCCGuGGCG-----UGGG- -5'
21392 3' -55.7 NC_004812.1 + 128349 0.74 0.535299
Target:  5'- cGGCCacUCcUCGGggGGCACgGCGUCCa -3'
miRNA:   3'- -CUGGa-AGuAGCCuuCCGUGgCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 99849 0.74 0.53431
Target:  5'- gGGCUgcagcUCGUCGGAgcgcugccgcaGGGCccccacgGCCGCGCCCa -3'
miRNA:   3'- -CUGGa----AGUAGCCU-----------UCCG-------UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 130550 0.79 0.2703
Target:  5'- gGGCCgggggCG-CGcGAGGGCGCCGCGCCCc -3'
miRNA:   3'- -CUGGaa---GUaGC-CUUCCGUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 143234 0.77 0.363735
Target:  5'- cGACCccCGgcgCGGAAGGgacCGCCGCACCCc -3'
miRNA:   3'- -CUGGaaGUa--GCCUUCC---GUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 143267 0.77 0.363735
Target:  5'- cGACCccCGgcgCGGAAGGgacCGCCGCACCCc -3'
miRNA:   3'- -CUGGaaGUa--GCCUUCC---GUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 152962 0.76 0.405177
Target:  5'- uGGCCgacgCAgacgCGGgcGGCGCCGCgcGCCCg -3'
miRNA:   3'- -CUGGaa--GUa---GCCuuCCGUGGCG--UGGG- -5'
21392 3' -55.7 NC_004812.1 + 83913 0.75 0.440397
Target:  5'- cGAgCgUUGUCGGAAGGCGuuGCugCCg -3'
miRNA:   3'- -CUgGaAGUAGCCUUCCGUggCGugGG- -5'
21392 3' -55.7 NC_004812.1 + 121739 0.75 0.458647
Target:  5'- gGGCCggcgcgCggCGGggGGCGCCGgGCCUc -3'
miRNA:   3'- -CUGGaa----GuaGCCuuCCGUGGCgUGGG- -5'
21392 3' -55.7 NC_004812.1 + 127546 0.74 0.496306
Target:  5'- gGGCCUcggUCGgcggCGGggGGCGCgggggagggggCGCGCCCc -3'
miRNA:   3'- -CUGGA---AGUa---GCCuuCCGUG-----------GCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 36450 0.74 0.525442
Target:  5'- cGGCCgcgUUGUCgaggagcgGGggGGCcCCGCGCCCc -3'
miRNA:   3'- -CUGGa--AGUAG--------CCuuCCGuGGCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.