miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 3' -55.7 NC_004812.1 + 131694 1.11 0.002308
Target:  5'- uGACCUUCAUCGGAAGGCACCGCACCCu -3'
miRNA:   3'- -CUGGAAGUAGCCUUCCGUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 93140 0.81 0.223021
Target:  5'- uGACgUUCGUCgcgagggaGGAGGGCGCCGC-CCCg -3'
miRNA:   3'- -CUGgAAGUAG--------CCUUCCGUGGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 126199 0.8 0.251685
Target:  5'- uGACCUUCA-CGugccuGAAGGcCGCCGCGCCCc -3'
miRNA:   3'- -CUGGAAGUaGC-----CUUCC-GUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 41243 0.8 0.25777
Target:  5'- cGCCUUCGUCuGucGGCGCCGCGuCCCc -3'
miRNA:   3'- cUGGAAGUAGcCuuCCGUGGCGU-GGG- -5'
21392 3' -55.7 NC_004812.1 + 5041 0.79 0.2703
Target:  5'- gGGCCgggggCG-CGcGAGGGCGCCGCGCCCc -3'
miRNA:   3'- -CUGGaa---GUaGC-CUUCCGUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 130550 0.79 0.2703
Target:  5'- gGGCCgggggCG-CGcGAGGGCGCCGCGCCCc -3'
miRNA:   3'- -CUGGaa---GUaGC-CUUCCGUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 42441 0.78 0.318011
Target:  5'- -cCCUUCcuccggCGGAAGGCcgGCCGCAUCCa -3'
miRNA:   3'- cuGGAAGua----GCCUUCCG--UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 143234 0.77 0.363735
Target:  5'- cGACCccCGgcgCGGAAGGgacCGCCGCACCCc -3'
miRNA:   3'- -CUGGaaGUa--GCCUUCC---GUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 143267 0.77 0.363735
Target:  5'- cGACCccCGgcgCGGAAGGgacCGCCGCACCCc -3'
miRNA:   3'- -CUGGaaGUa--GCCUUCC---GUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 152962 0.76 0.405177
Target:  5'- uGGCCgacgCAgacgCGGgcGGCGCCGCgcGCCCg -3'
miRNA:   3'- -CUGGaa--GUa---GCCuuCCGUGGCG--UGGG- -5'
21392 3' -55.7 NC_004812.1 + 70969 0.76 0.405177
Target:  5'- cGACCUgcc-CGGGAGaGCACCGCgggGCCCg -3'
miRNA:   3'- -CUGGAaguaGCCUUC-CGUGGCG---UGGG- -5'
21392 3' -55.7 NC_004812.1 + 27454 0.76 0.405177
Target:  5'- uGGCCgacgCAgacgCGGgcGGCGCCGCgcGCCCg -3'
miRNA:   3'- -CUGGaa--GUa---GCCuuCCGUGGCG--UGGG- -5'
21392 3' -55.7 NC_004812.1 + 83913 0.75 0.440397
Target:  5'- cGAgCgUUGUCGGAAGGCGuuGCugCCg -3'
miRNA:   3'- -CUgGaAGUAGCCUUCCGUggCGugGG- -5'
21392 3' -55.7 NC_004812.1 + 121739 0.75 0.458647
Target:  5'- gGGCCggcgcgCggCGGggGGCGCCGgGCCUc -3'
miRNA:   3'- -CUGGaa----GuaGCCuuCCGUGGCgUGGG- -5'
21392 3' -55.7 NC_004812.1 + 15999 0.75 0.477293
Target:  5'- cACCggugcaGGAGGGCGCCGgCGCCCa -3'
miRNA:   3'- cUGGaaguagCCUUCCGUGGC-GUGGG- -5'
21392 3' -55.7 NC_004812.1 + 98904 0.74 0.493432
Target:  5'- -cCCUUCGuUCGGggGGUuugcggcgcacgcgGCCGgCGCCCg -3'
miRNA:   3'- cuGGAAGU-AGCCuuCCG--------------UGGC-GUGGG- -5'
21392 3' -55.7 NC_004812.1 + 2037 0.74 0.496306
Target:  5'- gGGCCUcggUCGgcggCGGggGGCGCgggggagggggCGCGCCCc -3'
miRNA:   3'- -CUGGA---AGUa---GCCuuCCGUG-----------GCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 127546 0.74 0.496306
Target:  5'- gGGCCUcggUCGgcggCGGggGGCGCgggggagggggCGCGCCCc -3'
miRNA:   3'- -CUGGA---AGUa---GCCuuCCGUG-----------GCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 105035 0.74 0.50594
Target:  5'- cGGCCUccgCGaUGGGAGGCGCCGC-UCCg -3'
miRNA:   3'- -CUGGAa--GUaGCCUUCCGUGGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 21814 0.74 0.522498
Target:  5'- cGACggcgUCAUCGGAuccuccgaacccgaGGGCGUCGCGCCCu -3'
miRNA:   3'- -CUGga--AGUAGCCU--------------UCCGUGGCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.