miRNA display CGI


Results 1 - 20 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 3' -55.7 NC_004812.1 + 156387 0.66 0.914596
Target:  5'- gGGCCg----CGGGggccgGGGCugCGCgACCCg -3'
miRNA:   3'- -CUGGaaguaGCCU-----UCCGugGCG-UGGG- -5'
21392 3' -55.7 NC_004812.1 + 156211 0.67 0.87541
Target:  5'- aGGCCUgcgcgCGUgGGGggcgGGGCGCCGCgggauGCgCCg -3'
miRNA:   3'- -CUGGAa----GUAgCCU----UCCGUGGCG-----UG-GG- -5'
21392 3' -55.7 NC_004812.1 + 155594 0.67 0.87541
Target:  5'- gGGCCcUCG-CGG-GGGCGCgGC-CCCg -3'
miRNA:   3'- -CUGGaAGUaGCCuUCCGUGgCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 155269 0.68 0.82848
Target:  5'- cGGCCUUCcggCGGAccGC-CCGCggaccGCCCg -3'
miRNA:   3'- -CUGGAAGua-GCCUucCGuGGCG-----UGGG- -5'
21392 3' -55.7 NC_004812.1 + 154935 0.66 0.931033
Target:  5'- cGCCgcgggCGGGccgcGGCGCCGCGgCCa -3'
miRNA:   3'- cUGGaaguaGCCUu---CCGUGGCGUgGG- -5'
21392 3' -55.7 NC_004812.1 + 154537 0.7 0.717302
Target:  5'- gGACUggUAgacgCGGggGGCGcgcccccucccCCGCGCCCc -3'
miRNA:   3'- -CUGGaaGUa---GCCuuCCGU-----------GGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 154156 0.66 0.920313
Target:  5'- gGACUUccgCcgCGGcGAGGCgcacucgcACCGCGCCUg -3'
miRNA:   3'- -CUGGAa--GuaGCC-UUCCG--------UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 153752 0.69 0.811338
Target:  5'- cGCCUcgUCGUCGu--GGaCGCCGUGCCCc -3'
miRNA:   3'- cUGGA--AGUAGCcuuCC-GUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 153389 0.68 0.817415
Target:  5'- cGCCUUCGgcccgccgcgcgccUCGGGcccgcuGCGCCGCGCCg -3'
miRNA:   3'- cUGGAAGU--------------AGCCUuc----CGUGGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 153170 0.68 0.836788
Target:  5'- cGACCcccgCggCGGcuGGCGCCGCgugccgccgggGCCCa -3'
miRNA:   3'- -CUGGaa--GuaGCCuuCCGUGGCG-----------UGGG- -5'
21392 3' -55.7 NC_004812.1 + 153105 0.66 0.908642
Target:  5'- gGGCCgc---CGGccccGGGC-CCGCGCCCg -3'
miRNA:   3'- -CUGGaaguaGCCu---UCCGuGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 153086 0.69 0.775178
Target:  5'- gGGCCUgggUCuggugggCGGGcugucuGGGCGCCGC-CCCg -3'
miRNA:   3'- -CUGGA---AGua-----GCCU------UCCGUGGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 152962 0.76 0.405177
Target:  5'- uGGCCgacgCAgacgCGGgcGGCGCCGCgcGCCCg -3'
miRNA:   3'- -CUGGaa--GUa---GCCuuCCGUGGCG--UGGG- -5'
21392 3' -55.7 NC_004812.1 + 152945 0.66 0.902454
Target:  5'- gGACUUgggCGcCGGGcgggacuuGGGCGCCGgGCCUg -3'
miRNA:   3'- -CUGGAa--GUaGCCU--------UCCGUGGCgUGGG- -5'
21392 3' -55.7 NC_004812.1 + 152640 0.69 0.784432
Target:  5'- gGGCCggcgcgCGgcgGGggGGCGCCGgGCCUc -3'
miRNA:   3'- -CUGGaa----GUag-CCuuCCGUGGCgUGGG- -5'
21392 3' -55.7 NC_004812.1 + 152358 0.67 0.889383
Target:  5'- cGCCg-CcgCGGcGGGCGCCGcCGCCg -3'
miRNA:   3'- cUGGaaGuaGCCuUCCGUGGC-GUGGg -5'
21392 3' -55.7 NC_004812.1 + 152167 0.68 0.819994
Target:  5'- -uCCUUCAUCacc-GGCACCGUGgCCCg -3'
miRNA:   3'- cuGGAAGUAGccuuCCGUGGCGU-GGG- -5'
21392 3' -55.7 NC_004812.1 + 151551 0.69 0.784432
Target:  5'- gGGCCggggcCGG-GGGCGCgGCGCCCu -3'
miRNA:   3'- -CUGGaaguaGCCuUCCGUGgCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 150301 0.66 0.914596
Target:  5'- gGGCCccccgCGUgccCGG-GGGCGCCGCuCCCc -3'
miRNA:   3'- -CUGGaa---GUA---GCCuUCCGUGGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 150245 0.66 0.914596
Target:  5'- uGCCcgCGUCccuGGcGGGCGgCGCGCCUg -3'
miRNA:   3'- cUGGaaGUAG---CCuUCCGUgGCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.