miRNA display CGI


Results 41 - 60 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 3' -55.7 NC_004812.1 + 126512 0.72 0.626177
Target:  5'- aGGCCUgcc-CGGccGGgGCCGCGCCCc -3'
miRNA:   3'- -CUGGAaguaGCCuuCCgUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 12118 0.72 0.630263
Target:  5'- -uCCggCGUCGGGGggguugggggcgcgcGGCGCCGgGCCCg -3'
miRNA:   3'- cuGGaaGUAGCCUU---------------CCGUGGCgUGGG- -5'
21392 3' -55.7 NC_004812.1 + 1870 0.72 0.640479
Target:  5'- gGGCCUcCAUUGGcccGGGCGCCcgggccccgcccgcgGCACCCc -3'
miRNA:   3'- -CUGGAaGUAGCCu--UCCGUGG---------------CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 32771 0.72 0.640479
Target:  5'- gGGCCUcCAUUGGcccGGGCGCCcgggccccgcccgcgGCACCCc -3'
miRNA:   3'- -CUGGAaGUAGCCu--UCCGUGG---------------CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 60717 0.72 0.646606
Target:  5'- aGACCcgagggcgggCAUCGGGGcccgcccccucGGCccACCGCACCCg -3'
miRNA:   3'- -CUGGaa--------GUAGCCUU-----------CCG--UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 53782 0.71 0.656808
Target:  5'- cGCCggCGU-GGAGGcGCGCCGC-CCCg -3'
miRNA:   3'- cUGGaaGUAgCCUUC-CGUGGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 9904 0.71 0.656808
Target:  5'- cGCUUUCugGUCGGcGAGGCGUgGCGCCCg -3'
miRNA:   3'- cUGGAAG--UAGCC-UUCCGUGgCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 71966 0.71 0.656808
Target:  5'- cGACgCgcgCcgCGGGAGGCucaCGCGCCCc -3'
miRNA:   3'- -CUG-Gaa-GuaGCCUUCCGug-GCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 63052 0.71 0.666989
Target:  5'- cGCCUggggcgCGggCGGGAcGGCacgccGCCGCACCCg -3'
miRNA:   3'- cUGGAa-----GUa-GCCUU-CCG-----UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 31736 0.71 0.666989
Target:  5'- cGGCCgagaggCG-CGGGgcggGGGCGCgGCGCCCg -3'
miRNA:   3'- -CUGGaa----GUaGCCU----UCCGUGgCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 124847 0.71 0.666989
Target:  5'- aACUcgguggCGUgGGGcGGGCGCCGCGCCCc -3'
miRNA:   3'- cUGGaa----GUAgCCU-UCCGUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 67147 0.71 0.671055
Target:  5'- cGACC-UCGgccCGG-AGGCGCCGCagggccagccaguagGCCCg -3'
miRNA:   3'- -CUGGaAGUa--GCCuUCCGUGGCG---------------UGGG- -5'
21392 3' -55.7 NC_004812.1 + 124244 0.71 0.677143
Target:  5'- gGGCCUgg--CGGggGGCGCgCGCggcggcGCCCc -3'
miRNA:   3'- -CUGGAaguaGCCuuCCGUG-GCG------UGGG- -5'
21392 3' -55.7 NC_004812.1 + 119398 0.71 0.677143
Target:  5'- cGGCCgcgUCGUCGuGGAcGGCcCCGCGCUg -3'
miRNA:   3'- -CUGGa--AGUAGC-CUU-CCGuGGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 44046 0.71 0.684229
Target:  5'- cACCUgcgCGUCGGAcGGcGCGCCcccccgcucggcggGCGCCCg -3'
miRNA:   3'- cUGGAa--GUAGCCU-UC-CGUGG--------------CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 73910 0.71 0.68726
Target:  5'- aGCCgcCGUCGGccGGCGCCcagcgGCGCCUg -3'
miRNA:   3'- cUGGaaGUAGCCuuCCGUGG-----CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 128678 0.71 0.68726
Target:  5'- uGGCCggcggUCuucCGGGAGGCGggGCGCCCg -3'
miRNA:   3'- -CUGGa----AGua-GCCUUCCGUggCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 143838 0.71 0.68726
Target:  5'- cGCCUUUcUCGGgcGGUACCaCAUCCu -3'
miRNA:   3'- cUGGAAGuAGCCuuCCGUGGcGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 82532 0.71 0.696327
Target:  5'- aGGCCc----CGGGAGGCGCCGCccguggccaggaaGCCCu -3'
miRNA:   3'- -CUGGaaguaGCCUUCCGUGGCG-------------UGGG- -5'
21392 3' -55.7 NC_004812.1 + 96376 0.71 0.696327
Target:  5'- cGCCUggCGUCGGucauGGCcggcgacGCCGCGCUCg -3'
miRNA:   3'- cUGGAa-GUAGCCuu--CCG-------UGGCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.