miRNA display CGI


Results 41 - 60 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 3' -55.7 NC_004812.1 + 30879 0.66 0.914596
Target:  5'- gGGCCg----CGGGggccgGGGCugCGCgACCCg -3'
miRNA:   3'- -CUGGaaguaGCCU-----UCCGugGCG-UGGG- -5'
21392 3' -55.7 NC_004812.1 + 113958 0.66 0.914596
Target:  5'- cGCCUgggauggCGUCGcGggGGCGuuguccuguUCGCugCCg -3'
miRNA:   3'- cUGGAa------GUAGC-CuuCCGU---------GGCGugGG- -5'
21392 3' -55.7 NC_004812.1 + 130733 0.66 0.914596
Target:  5'- cGCCg----CGGAGGGCcgGCCGCcgccaACCCc -3'
miRNA:   3'- cUGGaaguaGCCUUCCG--UGGCG-----UGGG- -5'
21392 3' -55.7 NC_004812.1 + 150245 0.66 0.914596
Target:  5'- uGCCcgCGUCccuGGcGGGCGgCGCGCCUg -3'
miRNA:   3'- cUGGaaGUAG---CCuUCCGUgGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 18351 0.66 0.914596
Target:  5'- -gUCgaCAUCGGccaccggcGGCGCCGgGCCCg -3'
miRNA:   3'- cuGGaaGUAGCCuu------CCGUGGCgUGGG- -5'
21392 3' -55.7 NC_004812.1 + 121242 0.66 0.914596
Target:  5'- -uCCUUUgccaCGGggGGCGUCGC-CCCg -3'
miRNA:   3'- cuGGAAGua--GCCuuCCGUGGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 150301 0.66 0.914596
Target:  5'- gGGCCccccgCGUgccCGG-GGGCGCCGCuCCCc -3'
miRNA:   3'- -CUGGaa---GUA---GCCuUCCGUGGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 133931 0.66 0.914596
Target:  5'- cGGCCUgccCAUcgCGGAAGaGgACCuCGCCCa -3'
miRNA:   3'- -CUGGAa--GUA--GCCUUC-CgUGGcGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 98401 0.66 0.914596
Target:  5'- cGGCCg----CGGGGcGGCGCCGCAgCg -3'
miRNA:   3'- -CUGGaaguaGCCUU-CCGUGGCGUgGg -5'
21392 3' -55.7 NC_004812.1 + 119400 0.66 0.914596
Target:  5'- gGGCCccccgCGUgccCGG-GGGCGCCGCuCCCc -3'
miRNA:   3'- -CUGGaa---GUA---GCCuUCCGUGGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 47204 0.66 0.914596
Target:  5'- gGACCU------GggGGCGCgGCGCCCc -3'
miRNA:   3'- -CUGGAaguagcCuuCCGUGgCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 137877 0.66 0.914596
Target:  5'- cACCUUCGaUGGc--GCGCgGCGCCCc -3'
miRNA:   3'- cUGGAAGUaGCCuucCGUGgCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 119344 0.66 0.914596
Target:  5'- uGCCcgCGUCccuGGcGGGCGgCGCGCCUg -3'
miRNA:   3'- cUGGaaGUAG---CCuUCCGUgGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 156387 0.66 0.914596
Target:  5'- gGGCCg----CGGGggccgGGGCugCGCgACCCg -3'
miRNA:   3'- -CUGGaaguaGCCU-----UCCGugGCG-UGGG- -5'
21392 3' -55.7 NC_004812.1 + 20304 0.66 0.914596
Target:  5'- cGCCggcgCAgcgcgCGcGcAGGCACCGCcCCCa -3'
miRNA:   3'- cUGGaa--GUa----GC-CuUCCGUGGCGuGGG- -5'
21392 3' -55.7 NC_004812.1 + 140952 0.66 0.914596
Target:  5'- uGAC--UCAUCGGGgaggaGGGUcaaCGCACCCu -3'
miRNA:   3'- -CUGgaAGUAGCCU-----UCCGug-GCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 99699 0.66 0.914596
Target:  5'- cGCCgug--CGGc-GGCGCCuGCGCCCa -3'
miRNA:   3'- cUGGaaguaGCCuuCCGUGG-CGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 32655 0.66 0.912834
Target:  5'- gGAUCUccgCAugcuaaugcgucccUCGGggGGCcgGCCGCuccGCCCc -3'
miRNA:   3'- -CUGGAa--GU--------------AGCCuuCCG--UGGCG---UGGG- -5'
21392 3' -55.7 NC_004812.1 + 1754 0.66 0.912834
Target:  5'- gGAUCUccgCAugcuaaugcgucccUCGGggGGCcgGCCGCuccGCCCc -3'
miRNA:   3'- -CUGGAa--GU--------------AGCCuuCCG--UGGCG---UGGG- -5'
21392 3' -55.7 NC_004812.1 + 109590 0.66 0.908642
Target:  5'- uGCCcgUCuAUCGGguGGcCAUgGCGCCCc -3'
miRNA:   3'- cUGGa-AG-UAGCCuuCC-GUGgCGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.