miRNA display CGI


Results 21 - 40 of 334 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 3' -55.7 NC_004812.1 + 97141 0.66 0.925792
Target:  5'- gGGCCgUCAUgcaGGAGacGUACCGCGCCg -3'
miRNA:   3'- -CUGGaAGUAg--CCUUc-CGUGGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 13287 0.66 0.925792
Target:  5'- aGGCCU-CGgcgCGGcGGGGCguccgcgucuccGCCGCGCCg -3'
miRNA:   3'- -CUGGAaGUa--GCC-UUCCG------------UGGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 117113 0.66 0.925792
Target:  5'- uGACCaagcUCAUCGac---CGCCGCACCCu -3'
miRNA:   3'- -CUGGa---AGUAGCcuuccGUGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 56218 0.66 0.925792
Target:  5'- cGACCUcCGgcCGGu-GGCcUCGCGCCCc -3'
miRNA:   3'- -CUGGAaGUa-GCCuuCCGuGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 136597 0.66 0.925792
Target:  5'- uGCCgcgacgCGcgCGGAGacGGCGCCGCGCgCu -3'
miRNA:   3'- cUGGaa----GUa-GCCUU--CCGUGGCGUGgG- -5'
21392 3' -55.7 NC_004812.1 + 91191 0.66 0.925792
Target:  5'- gGACgCgggcUCGggggCGGggGGCGCgGCGUCCa -3'
miRNA:   3'- -CUG-Ga---AGUa---GCCuuCCGUGgCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 119863 0.66 0.925792
Target:  5'- uACCacCAgcugCGGAcGGGC-CUGCACCCc -3'
miRNA:   3'- cUGGaaGUa---GCCU-UCCGuGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 147680 0.66 0.924173
Target:  5'- gGGCUUUUAUCuccuGGcaaccggcccaagcAGGGCACCGUGCCa -3'
miRNA:   3'- -CUGGAAGUAG----CC--------------UUCCGUGGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 53525 0.66 0.920313
Target:  5'- gGACgCguauUCGGAGGGCuCCGgAUCCg -3'
miRNA:   3'- -CUG-GaaguAGCCUUCCGuGGCgUGGG- -5'
21392 3' -55.7 NC_004812.1 + 140727 0.66 0.920313
Target:  5'- cGCC-UCGUCGaGGuAGGCG-CGCACCg -3'
miRNA:   3'- cUGGaAGUAGC-CU-UCCGUgGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 28648 0.66 0.920313
Target:  5'- gGACUUccgCcgCGGcGAGGCgcacucgcACCGCGCCUg -3'
miRNA:   3'- -CUGGAa--GuaGCC-UUCCG--------UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 55457 0.66 0.920313
Target:  5'- cGGCCgUCAggUCGcaGAAGcGCACgCGCGCCg -3'
miRNA:   3'- -CUGGaAGU--AGC--CUUC-CGUG-GCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 33837 0.66 0.920313
Target:  5'- -uCCUcggUCAcccUCGGcGGGCGCaccgugCGCGCCCu -3'
miRNA:   3'- cuGGA---AGU---AGCCuUCCGUG------GCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 114172 0.66 0.920313
Target:  5'- cGGCCUUCcgCcggaGGAAGGgGCCGgACa- -3'
miRNA:   3'- -CUGGAAGuaG----CCUUCCgUGGCgUGgg -5'
21392 3' -55.7 NC_004812.1 + 154156 0.66 0.920313
Target:  5'- gGACUUccgCcgCGGcGAGGCgcacucgcACCGCGCCUg -3'
miRNA:   3'- -CUGGAa--GuaGCC-UUCCG--------UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 2936 0.66 0.920313
Target:  5'- -uCCUcggUCAcccUCGGcGGGCGCaccgugCGCGCCCu -3'
miRNA:   3'- cuGGA---AGU---AGCCuUCCGUG------GCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 109317 0.66 0.920313
Target:  5'- cGCCggCGgcgcUGGAGgcGGCGCCGCGCUa -3'
miRNA:   3'- cUGGaaGUa---GCCUU--CCGUGGCGUGGg -5'
21392 3' -55.7 NC_004812.1 + 114856 0.66 0.920313
Target:  5'- uGAUCUugUC-UUGGgcGcGCACgCGCACCCc -3'
miRNA:   3'- -CUGGA--AGuAGCCuuC-CGUG-GCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 61272 0.66 0.920313
Target:  5'- -cCCUccUCGUCGGAuccuggaugGGGCgugcggGCCGCGCUUc -3'
miRNA:   3'- cuGGA--AGUAGCCU---------UCCG------UGGCGUGGG- -5'
21392 3' -55.7 NC_004812.1 + 137794 0.66 0.919752
Target:  5'- gGAUCUggCGggCGGcgAGGGCGCCGCggagcagGCCCc -3'
miRNA:   3'- -CUGGAa-GUa-GCC--UUCCGUGGCG-------UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.