miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 5' -61.7 NC_004812.1 + 36893 0.67 0.628758
Target:  5'- cGGGGUG-GUagGCGCCg-GGGGGCGa -3'
miRNA:   3'- cCCCCACuCGgaCGCGGagCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 102177 0.67 0.61997
Target:  5'- cGGGGGcccgcggcGGGCCcaucgacacccggcgGCGUCUgGAGGACa -3'
miRNA:   3'- -CCCCCa-------CUCGGa--------------CGCGGAgCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 121984 0.67 0.618994
Target:  5'- uGGGcUGGGCCUgaGCGCCgggCG-GGACu -3'
miRNA:   3'- cCCCcACUCGGA--CGCGGa--GCuCCUGc -5'
21392 5' -61.7 NC_004812.1 + 100171 0.67 0.618994
Target:  5'- aGGGGGcGAcgaucGCCcgGCGCCUgGcGGACc -3'
miRNA:   3'- -CCCCCaCU-----CGGa-CGCGGAgCuCCUGc -5'
21392 5' -61.7 NC_004812.1 + 152885 0.67 0.618994
Target:  5'- uGGGcUGGGCCUgaGCGCCgggCG-GGACu -3'
miRNA:   3'- cCCCcACUCGGA--CGCGGa--GCuCCUGc -5'
21392 5' -61.7 NC_004812.1 + 38585 0.67 0.618994
Target:  5'- cGGGGGUGGGCggGCGCg--GGGGuCGc -3'
miRNA:   3'- -CCCCCACUCGgaCGCGgagCUCCuGC- -5'
21392 5' -61.7 NC_004812.1 + 7684 0.67 0.618994
Target:  5'- cGGGGGUGGGCggGCGCg--GGGGuCGc -3'
miRNA:   3'- -CCCCCACUCGgaCGCGgagCUCCuGC- -5'
21392 5' -61.7 NC_004812.1 + 30227 0.67 0.615091
Target:  5'- uGGGGGgcgcgcgcgggcgGGGCUcGCgGCCgCGGGGACa -3'
miRNA:   3'- -CCCCCa------------CUCGGaCG-CGGaGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 155735 0.67 0.615091
Target:  5'- uGGGGGgcgcgcgcgggcgGGGCUcGCgGCCgCGGGGACa -3'
miRNA:   3'- -CCCCCa------------CUCGGaCG-CGGaGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 25124 0.67 0.60924
Target:  5'- cGGGGcGUGGGCC-GCauaaugagauCCUCGAcgGGGCGg -3'
miRNA:   3'- -CCCC-CACUCGGaCGc---------GGAGCU--CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 84637 0.67 0.60924
Target:  5'- cGGGGcgcGUGAGCCUcccgcggcGCGCgUCGcggcAGGGCc -3'
miRNA:   3'- -CCCC---CACUCGGA--------CGCGgAGC----UCCUGc -5'
21392 5' -61.7 NC_004812.1 + 74719 0.67 0.60924
Target:  5'- -cGGGUGcuGGCCUGgGCC-CG-GGACu -3'
miRNA:   3'- ccCCCAC--UCGGACgCGGaGCuCCUGc -5'
21392 5' -61.7 NC_004812.1 + 154156 0.67 0.60924
Target:  5'- aGGGcGUccucGGCCgGCGCCuaUCGGGGAUGa -3'
miRNA:   3'- cCCC-CAc---UCGGaCGCGG--AGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 150633 0.67 0.609239
Target:  5'- cGGGGcGUGGGCC-GCauaaugagauCCUCGAcgGGGCGg -3'
miRNA:   3'- -CCCC-CACUCGGaCGc---------GGAGCU--CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 138001 0.67 0.609239
Target:  5'- gGGGGGgggGAGCggggGCGCCcCGuauacaaaagggGGGGCGa -3'
miRNA:   3'- -CCCCCa--CUCGga--CGCGGaGC------------UCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 123255 0.67 0.609239
Target:  5'- aGGGcGUccucGGCCgGCGCCuaUCGGGGAUGa -3'
miRNA:   3'- cCCC-CAc---UCGGaCGCGG--AGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 20598 0.67 0.600474
Target:  5'- cGGuGGcGAGgacgcgcgccugcgaCUGCGUCUCGGGGGCGg -3'
miRNA:   3'- cCC-CCaCUCg--------------GACGCGGAGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 3509 0.67 0.599501
Target:  5'- cGGGcccgGGGCCgGCgGCCcCGGGGGCGg -3'
miRNA:   3'- cCCCca--CUCGGaCG-CGGaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 129017 0.67 0.5995
Target:  5'- cGGGcccgGGGCCgGCgGCCcCGGGGGCGg -3'
miRNA:   3'- cCCCca--CUCGGaCG-CGGaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 82845 0.67 0.5995
Target:  5'- cGGGGGUGcgcgcGCCgaGCGCggggUGAGGugGu -3'
miRNA:   3'- -CCCCCACu----CGGa-CGCGga--GCUCCugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.