miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 5' -61.7 NC_004812.1 + 34753 0.71 0.416134
Target:  5'- uGGGGcG-GCCccgGgGCCUCGGGGugGa -3'
miRNA:   3'- cCCCCaCuCGGa--CgCGGAGCUCCugC- -5'
21392 5' -61.7 NC_004812.1 + 35196 0.68 0.551254
Target:  5'- cGGGGGacuGCCUGCcgguCCUCGAcauggagacGGGCGa -3'
miRNA:   3'- -CCCCCacuCGGACGc---GGAGCU---------CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 35892 0.71 0.383609
Target:  5'- -cGGG-GGGCCgUGCGCCgcagggcgggCGGGGGCGg -3'
miRNA:   3'- ccCCCaCUCGG-ACGCGGa---------GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 36500 0.73 0.290758
Target:  5'- gGGGGGgcggggucccccaggGGGCCggagGCGgCUCGGGGGCc -3'
miRNA:   3'- -CCCCCa--------------CUCGGa---CGCgGAGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 36613 0.67 0.628758
Target:  5'- gGGGGGgcggGGGUCUGcCGCgggagGAGGGCGc -3'
miRNA:   3'- -CCCCCa---CUCGGAC-GCGgag--CUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 36726 0.68 0.57044
Target:  5'- cGGcGGGcucugcGGGCCggcgGCGCgCUCGGGaGGCGg -3'
miRNA:   3'- -CC-CCCa-----CUCGGa---CGCG-GAGCUC-CUGC- -5'
21392 5' -61.7 NC_004812.1 + 36893 0.67 0.628758
Target:  5'- cGGGGUG-GUagGCGCCg-GGGGGCGa -3'
miRNA:   3'- cCCCCACuCGgaCGCGGagCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 37057 0.71 0.407846
Target:  5'- aGGGGGUcggGGGCCUGgGCggCGGGGGu- -3'
miRNA:   3'- -CCCCCA---CUCGGACgCGgaGCUCCUgc -5'
21392 5' -61.7 NC_004812.1 + 37170 0.66 0.677471
Target:  5'- cGGGGGgGAGCUaGgGCCa-GGGGcACGg -3'
miRNA:   3'- -CCCCCaCUCGGaCgCGGagCUCC-UGC- -5'
21392 5' -61.7 NC_004812.1 + 37689 0.72 0.367992
Target:  5'- -cGGGcGAGCC-GUGCCUCGGGgGGCGc -3'
miRNA:   3'- ccCCCaCUCGGaCGCGGAGCUC-CUGC- -5'
21392 5' -61.7 NC_004812.1 + 38585 0.67 0.618994
Target:  5'- cGGGGGUGGGCggGCGCg--GGGGuCGc -3'
miRNA:   3'- -CCCCCACUCGgaCGCGgagCUCCuGC- -5'
21392 5' -61.7 NC_004812.1 + 38624 0.66 0.677471
Target:  5'- cGGGGGUcu-CC-GCGCCgggCGAGGcCGg -3'
miRNA:   3'- -CCCCCAcucGGaCGCGGa--GCUCCuGC- -5'
21392 5' -61.7 NC_004812.1 + 40148 0.7 0.441607
Target:  5'- cGGGGUG-GCCgGCGCCccccUCcgGGGGACa -3'
miRNA:   3'- cCCCCACuCGGaCGCGG----AG--CUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 41761 0.68 0.589784
Target:  5'- uGGGGcugGGGCUUggcgcgccGCGCCUCGGccgcucGGGCGg -3'
miRNA:   3'- cCCCCa--CUCGGA--------CGCGGAGCU------CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 42335 0.74 0.283711
Target:  5'- cGGGGGUGuGUCgGCGCCgcgggucuUCG-GGGCGg -3'
miRNA:   3'- -CCCCCACuCGGaCGCGG--------AGCuCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 43486 0.67 0.638524
Target:  5'- cGGGGGaacGAccGCCaGCGCCaucagCGAGGGgGg -3'
miRNA:   3'- -CCCCCa--CU--CGGaCGCGGa----GCUCCUgC- -5'
21392 5' -61.7 NC_004812.1 + 44196 0.69 0.485935
Target:  5'- cGGGGGUGGGgCUcgGCGgCggCGcGGACGg -3'
miRNA:   3'- -CCCCCACUCgGA--CGCgGa-GCuCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 44536 0.72 0.360348
Target:  5'- aGGGGUGGGCgUG-GCCcgggcUCGAcGGACGg -3'
miRNA:   3'- cCCCCACUCGgACgCGG-----AGCU-CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 45267 0.66 0.667766
Target:  5'- uGGGGGgcccgcgGGGUCgGCGCCgcCGcGGGCa -3'
miRNA:   3'- -CCCCCa------CUCGGaCGCGGa-GCuCCUGc -5'
21392 5' -61.7 NC_004812.1 + 47466 0.69 0.504254
Target:  5'- -cGGGUGAGCCgcgucacccgccUGCuGCCUcagaagaucacCGGGGACGu -3'
miRNA:   3'- ccCCCACUCGG------------ACG-CGGA-----------GCUCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.