miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 5' -61.7 NC_004812.1 + 15750 0.67 0.632664
Target:  5'- cGGGGGcc-GCCcGCGCCgUCagccgggcccugggcGAGGACGa -3'
miRNA:   3'- -CCCCCacuCGGaCGCGG-AG---------------CUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 16805 0.71 0.391581
Target:  5'- cGGGGG-GAGUCUggaggacggGCGCCgCGGGGuCGg -3'
miRNA:   3'- -CCCCCaCUCGGA---------CGCGGaGCUCCuGC- -5'
21392 5' -61.7 NC_004812.1 + 17028 0.71 0.374965
Target:  5'- gGGGGGUGAagggGUCggcgggggGCGCCUCGGucccggccgccgcGGACGc -3'
miRNA:   3'- -CCCCCACU----CGGa-------CGCGGAGCU-------------CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 17157 0.7 0.433018
Target:  5'- cGGGGG-GAGUCgugGCGUCcgaGGGGACa -3'
miRNA:   3'- -CCCCCaCUCGGa--CGCGGag-CUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 20289 0.68 0.580094
Target:  5'- cGGGGGUGGGCggcGCGCCggCGcAGcGCGc -3'
miRNA:   3'- -CCCCCACUCGga-CGCGGa-GC-UCcUGC- -5'
21392 5' -61.7 NC_004812.1 + 20598 0.67 0.600474
Target:  5'- cGGuGGcGAGgacgcgcgccugcgaCUGCGUCUCGGGGGCGg -3'
miRNA:   3'- cCC-CCaCUCg--------------GACGCGGAGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 22914 0.66 0.69677
Target:  5'- gGGGGcGUG-GCC-GCGCCcccgCGccuGGACGc -3'
miRNA:   3'- -CCCC-CACuCGGaCGCGGa---GCu--CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 23939 0.66 0.710167
Target:  5'- gGGGagcacaucuagacgaGGUG-GCCaGCGaCCcCGAGGACGu -3'
miRNA:   3'- -CCC---------------CCACuCGGaCGC-GGaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 24503 0.68 0.580094
Target:  5'- -cGGG-GGGCCcccGCGCCgCGGGGGCu -3'
miRNA:   3'- ccCCCaCUCGGa--CGCGGaGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 25124 0.67 0.60924
Target:  5'- cGGGGcGUGGGCC-GCauaaugagauCCUCGAcgGGGCGg -3'
miRNA:   3'- -CCCC-CACUCGGaCGc---------GGAGCU--CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 29804 0.69 0.485935
Target:  5'- cGGGGGUcGGcGCCc-CGCCUCcGGGGACc -3'
miRNA:   3'- -CCCCCA-CU-CGGacGCGGAG-CUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 29892 0.66 0.677471
Target:  5'- cGGGGGccGGGCC-GgGCCgggCGuGGugGc -3'
miRNA:   3'- -CCCCCa-CUCGGaCgCGGa--GCuCCugC- -5'
21392 5' -61.7 NC_004812.1 + 29949 0.71 0.416135
Target:  5'- cGGGGGgccGGGCUcGCGCCgcCGGGGAg- -3'
miRNA:   3'- -CCCCCa--CUCGGaCGCGGa-GCUCCUgc -5'
21392 5' -61.7 NC_004812.1 + 30227 0.67 0.615091
Target:  5'- uGGGGGgcgcgcgcgggcgGGGCUcGCgGCCgCGGGGACa -3'
miRNA:   3'- -CCCCCa------------CUCGGaCG-CGGaGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 30386 0.66 0.654137
Target:  5'- aGGGGcgGGGCCgGCGCCcgggcugccgcgcCGAGGAgGc -3'
miRNA:   3'- cCCCCa-CUCGGaCGCGGa------------GCUCCUgC- -5'
21392 5' -61.7 NC_004812.1 + 30522 0.71 0.416135
Target:  5'- cGGGGccggGGGCC-GCGCCgCG-GGACGg -3'
miRNA:   3'- cCCCCa---CUCGGaCGCGGaGCuCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 30821 0.71 0.416134
Target:  5'- gGGGGGgcagGGcggcGCCagGCGCCgccCGGGGGCGc -3'
miRNA:   3'- -CCCCCa---CU----CGGa-CGCGGa--GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 30863 0.66 0.687141
Target:  5'- gGGGGGgaggaGAGCg-GgGCCgCGGGGGCc -3'
miRNA:   3'- -CCCCCa----CUCGgaCgCGGaGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 32291 0.69 0.532269
Target:  5'- cGGGGccGUGAG-CUGCuCCUCGGGGGa- -3'
miRNA:   3'- -CCCC--CACUCgGACGcGGAGCUCCUgc -5'
21392 5' -61.7 NC_004812.1 + 33187 0.66 0.658035
Target:  5'- cGGGGGUcucggGGGUCUcggGgGUCUCcgcgGAGGACGg -3'
miRNA:   3'- -CCCCCA-----CUCGGA---CgCGGAG----CUCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.