miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 5' -61.7 NC_004812.1 + 1432 0.71 0.399661
Target:  5'- cGGGGagGGGCCgGgGCCgCGAGGGCc -3'
miRNA:   3'- cCCCCa-CUCGGaCgCGGaGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 2286 0.66 0.658035
Target:  5'- cGGGGGUcucggGGGUCUcggGgGUCUCcgcgGAGGACGg -3'
miRNA:   3'- -CCCCCA-----CUCGGA---CgCGGAG----CUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 3509 0.67 0.599501
Target:  5'- cGGGcccgGGGCCgGCgGCCcCGGGGGCGg -3'
miRNA:   3'- cCCCca--CUCGGaCG-CGGaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 4295 0.68 0.551253
Target:  5'- cGGGGGacuGCCUGCcgguCCUCGAcauggagacGGGCGa -3'
miRNA:   3'- -CCCCCacuCGGACGc---GGAGCU---------CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 4990 0.71 0.383609
Target:  5'- -cGGG-GGGCCgUGCGCCgcagggcgggCGGGGGCGg -3'
miRNA:   3'- ccCCCaCUCGG-ACGCGGa---------GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 5599 0.73 0.290758
Target:  5'- gGGGGGgcggggucccccaggGGGCCggagGCGgCUCGGGGGCc -3'
miRNA:   3'- -CCCCCa--------------CUCGGa---CGCgGAGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 5712 0.67 0.628758
Target:  5'- gGGGGGgcggGGGUCUGcCGCgggagGAGGGCGc -3'
miRNA:   3'- -CCCCCa---CUCGGAC-GCGgag--CUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 5825 0.68 0.570439
Target:  5'- cGGcGGGcucugcGGGCCggcgGCGCgCUCGGGaGGCGg -3'
miRNA:   3'- -CC-CCCa-----CUCGGa---CGCG-GAGCUC-CUGC- -5'
21392 5' -61.7 NC_004812.1 + 5978 0.7 0.422839
Target:  5'- gGGGGGcGAGUCgcggggugguagGCGCCg-GGGGGCGa -3'
miRNA:   3'- -CCCCCaCUCGGa-----------CGCGGagCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 6156 0.71 0.407845
Target:  5'- aGGGGGUcggGGGCCUGgGCggCGGGGGu- -3'
miRNA:   3'- -CCCCCA---CUCGGACgCGgaGCUCCUgc -5'
21392 5' -61.7 NC_004812.1 + 6269 0.66 0.67747
Target:  5'- cGGGGGgGAGCUaGgGCCa-GGGGcACGg -3'
miRNA:   3'- -CCCCCaCUCGGaCgCGGagCUCC-UGC- -5'
21392 5' -61.7 NC_004812.1 + 6788 0.72 0.367991
Target:  5'- -cGGGcGAGCC-GUGCCUCGGGgGGCGc -3'
miRNA:   3'- ccCCCaCUCGGaCGCGGAGCUC-CUGC- -5'
21392 5' -61.7 NC_004812.1 + 7684 0.67 0.618994
Target:  5'- cGGGGGUGGGCggGCGCg--GGGGuCGc -3'
miRNA:   3'- -CCCCCACUCGgaCGCGgagCUCCuGC- -5'
21392 5' -61.7 NC_004812.1 + 7723 0.66 0.67747
Target:  5'- cGGGGGUcu-CC-GCGCCgggCGAGGcCGg -3'
miRNA:   3'- -CCCCCAcucGGaCGCGGa--GCUCCuGC- -5'
21392 5' -61.7 NC_004812.1 + 12366 0.66 0.687141
Target:  5'- cGGGGGgcgcgcccGGCCgcGCgGCCggGAGGGCGa -3'
miRNA:   3'- -CCCCCac------UCGGa-CG-CGGagCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 13366 0.7 0.441607
Target:  5'- cGGGGGUGcggcGGUCccuuccGCGCCgggggUCGGGGGCGc -3'
miRNA:   3'- -CCCCCAC----UCGGa-----CGCGG-----AGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 13410 0.66 0.674563
Target:  5'- cGGGGGUGAcggccggaggggugGCC-GuCGUUUCGgGGGACGc -3'
miRNA:   3'- -CCCCCACU--------------CGGaC-GCGGAGC-UCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 13461 0.75 0.242009
Target:  5'- cGGGGGUGGGgggugGCGUCgCGGGGACGa -3'
miRNA:   3'- -CCCCCACUCgga--CGCGGaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 14529 0.68 0.580095
Target:  5'- uGGGcGGcagcUGGGCC-GCGaCCgCGGGGGCGg -3'
miRNA:   3'- -CCC-CC----ACUCGGaCGC-GGaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 15336 0.67 0.628758
Target:  5'- aGGGGGaagUGAcGCa-GCGCCUgGAGG-CGu -3'
miRNA:   3'- -CCCCC---ACU-CGgaCGCGGAgCUCCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.