miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 5' -61.7 NC_004812.1 + 5978 0.7 0.422839
Target:  5'- gGGGGGcGAGUCgcggggugguagGCGCCg-GGGGGCGa -3'
miRNA:   3'- -CCCCCaCUCGGa-----------CGCGGagCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 115193 0.71 0.383609
Target:  5'- cGGGG-GGGCCggGaaaGCCgCGAGGGCGa -3'
miRNA:   3'- cCCCCaCUCGGa-Cg--CGGaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 98065 0.71 0.391581
Target:  5'- cGGGGGcggccgGAGCC-GgGCCccgggcuaUCGGGGGCGg -3'
miRNA:   3'- -CCCCCa-----CUCGGaCgCGG--------AGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 126940 0.71 0.39966
Target:  5'- cGGGGagGGGCCgGgGCCgCGAGGGCc -3'
miRNA:   3'- cCCCCa-CUCGGaCgCGGaGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 6156 0.71 0.407845
Target:  5'- aGGGGGUcggGGGCCUGgGCggCGGGGGu- -3'
miRNA:   3'- -CCCCCA---CUCGGACgCGgaGCUCCUgc -5'
21392 5' -61.7 NC_004812.1 + 34753 0.71 0.416134
Target:  5'- uGGGGcG-GCCccgGgGCCUCGGGGugGa -3'
miRNA:   3'- cCCCCaCuCGGa--CgCGGAGCUCCugC- -5'
21392 5' -61.7 NC_004812.1 + 30821 0.71 0.416134
Target:  5'- gGGGGGgcagGGcggcGCCagGCGCCgccCGGGGGCGc -3'
miRNA:   3'- -CCCCCa---CU----CGGa-CGCGGa--GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 155458 0.71 0.416134
Target:  5'- cGGGGGgccGGGCUcGCGCCgcCGGGGAg- -3'
miRNA:   3'- -CCCCCa--CUCGGaCGCGGa-GCUCCUgc -5'
21392 5' -61.7 NC_004812.1 + 156030 0.71 0.416134
Target:  5'- cGGGGccggGGGCC-GCGCCgCG-GGACGg -3'
miRNA:   3'- cCCCCa---CUCGGaCGCGGaGCuCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 79341 0.71 0.383609
Target:  5'- cGGGGGcGGGCagcgccagcgGCGCCcccgCGAGGGCa -3'
miRNA:   3'- -CCCCCaCUCGga--------CGCGGa---GCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 4990 0.71 0.383609
Target:  5'- -cGGG-GGGCCgUGCGCCgcagggcgggCGGGGGCGg -3'
miRNA:   3'- ccCCCaCUCGG-ACGCGGa---------GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 109601 0.71 0.375746
Target:  5'- -cGGGUG-GCCaugGCGCCcCGGGGGCa -3'
miRNA:   3'- ccCCCACuCGGa--CGCGGaGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 135116 0.74 0.277422
Target:  5'- aGGGGGUGGGCCUggggugggGUGUUUgggGAGGACGa -3'
miRNA:   3'- -CCCCCACUCGGA--------CGCGGAg--CUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 5599 0.73 0.290758
Target:  5'- gGGGGGgcggggucccccaggGGGCCggagGCGgCUCGGGGGCc -3'
miRNA:   3'- -CCCCCa--------------CUCGGa---CGCgGAGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 98671 0.73 0.312721
Target:  5'- cGGGGGUcGAGCCgggGCgggcgcggucgaaccGCCgcgcCGGGGGCGg -3'
miRNA:   3'- -CCCCCA-CUCGGa--CG---------------CGGa---GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 121494 0.72 0.330895
Target:  5'- gGGGaGGUagcgcgugGGGCCggGCGCCgCGGGGGCGc -3'
miRNA:   3'- -CCC-CCA--------CUCGGa-CGCGGaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 107910 0.72 0.345396
Target:  5'- cGGGGGUGcgucccccAGCCacagaGCGCCcCGAGGAgGc -3'
miRNA:   3'- -CCCCCAC--------UCGGa----CGCGGaGCUCCUgC- -5'
21392 5' -61.7 NC_004812.1 + 44536 0.72 0.360348
Target:  5'- aGGGGUGGGCgUG-GCCcgggcUCGAcGGACGg -3'
miRNA:   3'- cCCCCACUCGgACgCGG-----AGCU-CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 6788 0.72 0.367991
Target:  5'- -cGGGcGAGCC-GUGCCUCGGGgGGCGc -3'
miRNA:   3'- ccCCCaCUCGGaCGCGGAGCUC-CUGC- -5'
21392 5' -61.7 NC_004812.1 + 122109 0.71 0.375746
Target:  5'- -uGGGUcaGGGCCUGgGCCagggccugggCGAGGACGg -3'
miRNA:   3'- ccCCCA--CUCGGACgCGGa---------GCUCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.