miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 5' -61.7 NC_004812.1 + 71907 0.66 0.67747
Target:  5'- cGGGcGGcgcgGcGCCgcggGCGCUgcagcggCGAGGACGg -3'
miRNA:   3'- -CCC-CCa---CuCGGa---CGCGGa------GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 45267 0.66 0.667766
Target:  5'- uGGGGGgcccgcgGGGUCgGCGCCgcCGcGGGCa -3'
miRNA:   3'- -CCCCCa------CUCGGaCGCGGa-GCuCCUGc -5'
21392 5' -61.7 NC_004812.1 + 61293 0.66 0.658035
Target:  5'- uGGGGcGUGcgGGCC-GCGCUUCccuccgcGGGACGa -3'
miRNA:   3'- -CCCC-CAC--UCGGaCGCGGAGc------UCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 138426 0.66 0.67747
Target:  5'- cGGGGGgcuGCCgGCGCCccaUCGcccucAGGugGu -3'
miRNA:   3'- -CCCCCacuCGGaCGCGG---AGC-----UCCugC- -5'
21392 5' -61.7 NC_004812.1 + 59625 0.66 0.687141
Target:  5'- cGGGGGUGgcGGCCccGCaGCCgcaUGAGGGUGg -3'
miRNA:   3'- -CCCCCAC--UCGGa-CG-CGGa--GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 155400 0.66 0.67747
Target:  5'- cGGGGGccGGGCC-GgGCCgggCGuGGugGc -3'
miRNA:   3'- -CCCCCa-CUCGGaCgCGGa--GCuCCugC- -5'
21392 5' -61.7 NC_004812.1 + 103981 0.66 0.687141
Target:  5'- gGGGGGcUGcGGCauaauCUGCGCCUggcUGAGG-CGg -3'
miRNA:   3'- -CCCCC-AC-UCG-----GACGCGGA---GCUCCuGC- -5'
21392 5' -61.7 NC_004812.1 + 152818 0.66 0.706351
Target:  5'- cGGGccugaGGUcGGGCCUgaGCGCCgggGGGGACu -3'
miRNA:   3'- -CCC-----CCA-CUCGGA--CGCGGag-CUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 122418 0.66 0.667766
Target:  5'- cGGGuggacgcgcGGUGGGCCcggGCGgcgucuCCUCGGGcGGCGg -3'
miRNA:   3'- -CCC---------CCACUCGGa--CGC------GGAGCUC-CUGC- -5'
21392 5' -61.7 NC_004812.1 + 135689 0.66 0.667766
Target:  5'- aGGGGGUGGuUgUGUGCCgUGGGGAa- -3'
miRNA:   3'- -CCCCCACUcGgACGCGGaGCUCCUgc -5'
21392 5' -61.7 NC_004812.1 + 22914 0.66 0.69677
Target:  5'- gGGGGcGUG-GCC-GCGCCcccgCGccuGGACGc -3'
miRNA:   3'- -CCCC-CACuCGGaCGCGGa---GCu--CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 6269 0.66 0.67747
Target:  5'- cGGGGGgGAGCUaGgGCCa-GGGGcACGg -3'
miRNA:   3'- -CCCCCaCUCGGaCgCGGagCUCC-UGC- -5'
21392 5' -61.7 NC_004812.1 + 72523 0.66 0.667766
Target:  5'- cGGGGUccGGGCCgGCGCC-CGcGG-CGa -3'
miRNA:   3'- cCCCCA--CUCGGaCGCGGaGCuCCuGC- -5'
21392 5' -61.7 NC_004812.1 + 53757 0.66 0.667766
Target:  5'- uGGGGGUggucagGAGgUUGCGCgUCGccGGCGu -3'
miRNA:   3'- -CCCCCA------CUCgGACGCGgAGCucCUGC- -5'
21392 5' -61.7 NC_004812.1 + 70868 0.66 0.667766
Target:  5'- gGGGGGcGuGgCUGCGCgggGGGGGCGg -3'
miRNA:   3'- -CCCCCaCuCgGACGCGgagCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 147869 0.66 0.67747
Target:  5'- uGGGGGgucgGGGCCgucgagGCG-UUCGGGGcucGCGa -3'
miRNA:   3'- -CCCCCa---CUCGGa-----CGCgGAGCUCC---UGC- -5'
21392 5' -61.7 NC_004812.1 + 156371 0.66 0.687141
Target:  5'- gGGGGGgaggaGAGCg-GgGCCgCGGGGGCc -3'
miRNA:   3'- -CCCCCa----CUCGgaCgCGGaGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 155894 0.66 0.654137
Target:  5'- aGGGGcgGGGCCgGCGCCcgggcugccgcgcCGAGGAgGc -3'
miRNA:   3'- cCCCCa-CUCGGaCGCGGa------------GCUCCUgC- -5'
21392 5' -61.7 NC_004812.1 + 7723 0.66 0.67747
Target:  5'- cGGGGGUcu-CC-GCGCCgggCGAGGcCGg -3'
miRNA:   3'- -CCCCCAcucGGaCGCGGa--GCUCCuGC- -5'
21392 5' -61.7 NC_004812.1 + 134846 0.66 0.67747
Target:  5'- gGGGGGUGGcGaCCgacgGCGCgUCGGcGGCa -3'
miRNA:   3'- -CCCCCACU-C-GGa---CGCGgAGCUcCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.