miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 5' -61.7 NC_004812.1 + 131730 0.98 0.006202
Target:  5'- aGGGGGU-AGCCUGCGCCUCGAGGACGc -3'
miRNA:   3'- -CCCCCAcUCGGACGCGGAGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 63145 0.75 0.242009
Target:  5'- cGGGGGaggggGAGCCgccGCGgccuCCUCGGGGACc -3'
miRNA:   3'- -CCCCCa----CUCGGa--CGC----GGAGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 13461 0.75 0.242009
Target:  5'- cGGGGGUGGGgggugGCGUCgCGGGGACGa -3'
miRNA:   3'- -CCCCCACUCgga--CGCGGaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 72481 0.75 0.242009
Target:  5'- aGGGGGgcGGCg-GCGCCUCGGGGuCGg -3'
miRNA:   3'- -CCCCCacUCGgaCGCGGAGCUCCuGC- -5'
21392 5' -61.7 NC_004812.1 + 77240 0.75 0.247639
Target:  5'- cGGGGGUGuggGGCgCUGC-CCUCGcgGGGGCGc -3'
miRNA:   3'- -CCCCCAC---UCG-GACGcGGAGC--UCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 105811 0.74 0.273702
Target:  5'- uGGGGGUGggggcuccGGCCggcggcgGCgcgggguucaucucgGCCUCGGGGACGu -3'
miRNA:   3'- -CCCCCAC--------UCGGa------CG---------------CGGAGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 135116 0.74 0.277422
Target:  5'- aGGGGGUGGGCCUggggugggGUGUUUgggGAGGACGa -3'
miRNA:   3'- -CCCCCACUCGGA--------CGCGGAg--CUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 42335 0.74 0.283711
Target:  5'- cGGGGGUGuGUCgGCGCCgcgggucuUCG-GGGCGg -3'
miRNA:   3'- -CCCCCACuCGGaCGCGG--------AGCuCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 5599 0.73 0.290758
Target:  5'- gGGGGGgcggggucccccaggGGGCCggagGCGgCUCGGGGGCc -3'
miRNA:   3'- -CCCCCa--------------CUCGGa---CGCgGAGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 36500 0.73 0.290758
Target:  5'- gGGGGGgcggggucccccaggGGGCCggagGCGgCUCGGGGGCc -3'
miRNA:   3'- -CCCCCa--------------CUCGGa---CGCgGAGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 98671 0.73 0.312721
Target:  5'- cGGGGGUcGAGCCgggGCgggcgcggucgaaccGCCgcgcCGGGGGCGg -3'
miRNA:   3'- -CCCCCA-CUCGGa--CG---------------CGGa---GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 121494 0.72 0.330895
Target:  5'- gGGGaGGUagcgcgugGGGCCggGCGCCgCGGGGGCGc -3'
miRNA:   3'- -CCC-CCA--------CUCGGa-CGCGGaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 152395 0.72 0.330895
Target:  5'- gGGGaGGUagcgcgugGGGCCggGCGCCgCGGGGGCGc -3'
miRNA:   3'- -CCC-CCA--------CUCGGa-CGCGGaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 107910 0.72 0.345396
Target:  5'- cGGGGGUGcgucccccAGCCacagaGCGCCcCGAGGAgGc -3'
miRNA:   3'- -CCCCCAC--------UCGGa----CGCGGaGCUCCUgC- -5'
21392 5' -61.7 NC_004812.1 + 124917 0.72 0.345397
Target:  5'- --cGGa-GGCCUGCGCCggCGAGGACGa -3'
miRNA:   3'- cccCCacUCGGACGCGGa-GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 116401 0.72 0.358077
Target:  5'- cGGGcGGUcgccgauccgcugcGGGCCcGCGCCcUGGGGACGg -3'
miRNA:   3'- -CCC-CCA--------------CUCGGaCGCGGaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 44536 0.72 0.360348
Target:  5'- aGGGGUGGGCgUG-GCCcgggcUCGAcGGACGg -3'
miRNA:   3'- cCCCCACUCGgACgCGG-----AGCU-CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 6788 0.72 0.367991
Target:  5'- -cGGGcGAGCC-GUGCCUCGGGgGGCGc -3'
miRNA:   3'- ccCCCaCUCGGaCGCGGAGCUC-CUGC- -5'
21392 5' -61.7 NC_004812.1 + 80384 0.72 0.367992
Target:  5'- aGGGGGaguucggGGGCCUGCuGCacgcCGAGGGCu -3'
miRNA:   3'- -CCCCCa------CUCGGACG-CGga--GCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 37689 0.72 0.367992
Target:  5'- -cGGGcGAGCC-GUGCCUCGGGgGGCGc -3'
miRNA:   3'- ccCCCaCUCGGaCGCGGAGCUC-CUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.