miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 5' -61.7 NC_004812.1 + 17028 0.71 0.374965
Target:  5'- gGGGGGUGAagggGUCggcgggggGCGCCUCGGucccggccgccgcGGACGc -3'
miRNA:   3'- -CCCCCACU----CGGa-------CGCGGAGCU-------------CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 109601 0.71 0.375746
Target:  5'- -cGGGUG-GCCaugGCGCCcCGGGGGCa -3'
miRNA:   3'- ccCCCACuCGGa--CGCGGaGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 122109 0.71 0.375746
Target:  5'- -uGGGUcaGGGCCUGgGCCagggccugggCGAGGACGg -3'
miRNA:   3'- ccCCCA--CUCGGACgCGGa---------GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 153010 0.71 0.375746
Target:  5'- -uGGGUcaGGGCCUGgGCCagggccugggCGAGGACGg -3'
miRNA:   3'- ccCCCA--CUCGGACgCGGa---------GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 35892 0.71 0.383609
Target:  5'- -cGGG-GGGCCgUGCGCCgcagggcgggCGGGGGCGg -3'
miRNA:   3'- ccCCCaCUCGG-ACGCGGa---------GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 4990 0.71 0.383609
Target:  5'- -cGGG-GGGCCgUGCGCCgcagggcgggCGGGGGCGg -3'
miRNA:   3'- ccCCCaCUCGG-ACGCGGa---------GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 79341 0.71 0.383609
Target:  5'- cGGGGGcGGGCagcgccagcgGCGCCcccgCGAGGGCa -3'
miRNA:   3'- -CCCCCaCUCGga--------CGCGGa---GCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 115193 0.71 0.383609
Target:  5'- cGGGG-GGGCCggGaaaGCCgCGAGGGCGa -3'
miRNA:   3'- cCCCCaCUCGGa-Cg--CGGaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 16805 0.71 0.391581
Target:  5'- cGGGGG-GAGUCUggaggacggGCGCCgCGGGGuCGg -3'
miRNA:   3'- -CCCCCaCUCGGA---------CGCGGaGCUCCuGC- -5'
21392 5' -61.7 NC_004812.1 + 98065 0.71 0.391581
Target:  5'- cGGGGGcggccgGAGCC-GgGCCccgggcuaUCGGGGGCGg -3'
miRNA:   3'- -CCCCCa-----CUCGGaCgCGG--------AGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 126940 0.71 0.39966
Target:  5'- cGGGGagGGGCCgGgGCCgCGAGGGCc -3'
miRNA:   3'- cCCCCa-CUCGGaCgCGGaGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 1432 0.71 0.399661
Target:  5'- cGGGGagGGGCCgGgGCCgCGAGGGCc -3'
miRNA:   3'- cCCCCa-CUCGGaCgCGGaGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 141810 0.71 0.399661
Target:  5'- cGGGGGUGccgcucGGCCaugGCGCgggucggCGGGGACGc -3'
miRNA:   3'- -CCCCCAC------UCGGa--CGCGga-----GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 6156 0.71 0.407845
Target:  5'- aGGGGGUcggGGGCCUGgGCggCGGGGGu- -3'
miRNA:   3'- -CCCCCA---CUCGGACgCGgaGCUCCUgc -5'
21392 5' -61.7 NC_004812.1 + 37057 0.71 0.407846
Target:  5'- aGGGGGUcggGGGCCUGgGCggCGGGGGu- -3'
miRNA:   3'- -CCCCCA---CUCGGACgCGgaGCUCCUgc -5'
21392 5' -61.7 NC_004812.1 + 145778 0.71 0.407846
Target:  5'- gGGGGGUGccggaagcagcGCgaGCGCCUCGGgcucgguguGGGCGg -3'
miRNA:   3'- -CCCCCACu----------CGgaCGCGGAGCU---------CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 155458 0.71 0.416134
Target:  5'- cGGGGGgccGGGCUcGCGCCgcCGGGGAg- -3'
miRNA:   3'- -CCCCCa--CUCGGaCGCGGa-GCUCCUgc -5'
21392 5' -61.7 NC_004812.1 + 30821 0.71 0.416134
Target:  5'- gGGGGGgcagGGcggcGCCagGCGCCgccCGGGGGCGc -3'
miRNA:   3'- -CCCCCa---CU----CGGa-CGCGGa--GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 34753 0.71 0.416134
Target:  5'- uGGGGcG-GCCccgGgGCCUCGGGGugGa -3'
miRNA:   3'- cCCCCaCuCGGa--CgCGGAGCUCCugC- -5'
21392 5' -61.7 NC_004812.1 + 156030 0.71 0.416134
Target:  5'- cGGGGccggGGGCC-GCGCCgCG-GGACGg -3'
miRNA:   3'- cCCCCa---CUCGGaCGCGGaGCuCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.