miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21392 5' -61.7 NC_004812.1 + 156371 0.66 0.687141
Target:  5'- gGGGGGgaggaGAGCg-GgGCCgCGGGGGCc -3'
miRNA:   3'- -CCCCCa----CUCGgaCgCGGaGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 156030 0.71 0.416134
Target:  5'- cGGGGccggGGGCC-GCGCCgCG-GGACGg -3'
miRNA:   3'- cCCCCa---CUCGGaCGCGGaGCuCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 155894 0.66 0.654137
Target:  5'- aGGGGcgGGGCCgGCGCCcgggcugccgcgcCGAGGAgGc -3'
miRNA:   3'- cCCCCa-CUCGGaCGCGGa------------GCUCCUgC- -5'
21392 5' -61.7 NC_004812.1 + 155735 0.67 0.615091
Target:  5'- uGGGGGgcgcgcgcgggcgGGGCUcGCgGCCgCGGGGACa -3'
miRNA:   3'- -CCCCCa------------CUCGGaCG-CGGaGCUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 155458 0.71 0.416134
Target:  5'- cGGGGGgccGGGCUcGCGCCgcCGGGGAg- -3'
miRNA:   3'- -CCCCCa--CUCGGaCGCGGa-GCUCCUgc -5'
21392 5' -61.7 NC_004812.1 + 155400 0.66 0.67747
Target:  5'- cGGGGGccGGGCC-GgGCCgggCGuGGugGc -3'
miRNA:   3'- -CCCCCa-CUCGGaCgCGGa--GCuCCugC- -5'
21392 5' -61.7 NC_004812.1 + 155312 0.69 0.485935
Target:  5'- cGGGGGUcGGcGCCc-CGCCUCcGGGGACc -3'
miRNA:   3'- -CCCCCA-CU-CGGacGCGGAG-CUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 154156 0.67 0.60924
Target:  5'- aGGGcGUccucGGCCgGCGCCuaUCGGGGAUGa -3'
miRNA:   3'- cCCC-CAc---UCGGaCGCGG--AGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 153319 0.66 0.667766
Target:  5'- cGGGuggacgcgcGGUGGGCCcggGCGgcgucuCCUCGGGcGGCGg -3'
miRNA:   3'- -CCC---------CCACUCGGa--CGC------GGAGCUC-CUGC- -5'
21392 5' -61.7 NC_004812.1 + 153097 0.7 0.424526
Target:  5'- uGGuGGGcGGGCUgucuggGCGCCgcccCGGGGGCGg -3'
miRNA:   3'- -CC-CCCaCUCGGa-----CGCGGa---GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 153010 0.71 0.375746
Target:  5'- -uGGGUcaGGGCCUGgGCCagggccugggCGAGGACGg -3'
miRNA:   3'- ccCCCA--CUCGGACgCGGa---------GCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 152885 0.67 0.618994
Target:  5'- uGGGcUGGGCCUgaGCGCCgggCG-GGACu -3'
miRNA:   3'- cCCCcACUCGGA--CGCGGa--GCuCCUGc -5'
21392 5' -61.7 NC_004812.1 + 152818 0.66 0.706351
Target:  5'- cGGGccugaGGUcGGGCCUgaGCGCCgggGGGGACu -3'
miRNA:   3'- -CCC-----CCA-CUCGGA--CGCGGag-CUCCUGc -5'
21392 5' -61.7 NC_004812.1 + 152680 0.69 0.494141
Target:  5'- cGGGGGcagcgagggcgcuUGGGCCcucGCGUggCGGGGGCGg -3'
miRNA:   3'- -CCCCC-------------ACUCGGa--CGCGgaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 152395 0.72 0.330895
Target:  5'- gGGGaGGUagcgcgugGGGCCggGCGCCgCGGGGGCGc -3'
miRNA:   3'- -CCC-CCA--------CUCGGa-CGCGGaGCUCCUGC- -5'
21392 5' -61.7 NC_004812.1 + 150633 0.67 0.609239
Target:  5'- cGGGGcGUGGGCC-GCauaaugagauCCUCGAcgGGGCGg -3'
miRNA:   3'- -CCCC-CACUCGGaCGc---------GGAGCU--CCUGC- -5'
21392 5' -61.7 NC_004812.1 + 148577 0.7 0.424526
Target:  5'- gGGGGGUGccggcggaggccGGCCcGCGCCcccCGGGGucGCGg -3'
miRNA:   3'- -CCCCCAC------------UCGGaCGCGGa--GCUCC--UGC- -5'
21392 5' -61.7 NC_004812.1 + 148523 0.67 0.648285
Target:  5'- gGGGGGgcggcgcGGGCCgccggGCGCggCGGGGucGCGg -3'
miRNA:   3'- -CCCCCa------CUCGGa----CGCGgaGCUCC--UGC- -5'
21392 5' -61.7 NC_004812.1 + 147869 0.66 0.67747
Target:  5'- uGGGGGgucgGGGCCgucgagGCG-UUCGGGGcucGCGa -3'
miRNA:   3'- -CCCCCa---CUCGGa-----CGCgGAGCUCC---UGC- -5'
21392 5' -61.7 NC_004812.1 + 146969 0.66 0.677471
Target:  5'- cGGGGUGGGaguggGCGCUggggCGAGGgacuGCGg -3'
miRNA:   3'- cCCCCACUCgga--CGCGGa---GCUCC----UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.