miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21395 3' -57.6 NC_004812.1 + 1451 0.73 0.475317
Target:  5'- cGAGGGCcgggcacggcGGCGACgCCggCGUCCUCGg -3'
miRNA:   3'- uCUCUCGu---------UCGCUGgGGa-GCAGGAGC- -5'
21395 3' -57.6 NC_004812.1 + 2063 0.71 0.557961
Target:  5'- gGGGGAGgGGGCGcGCCCCccgcgucuaccaGUCCUCGg -3'
miRNA:   3'- -UCUCUCgUUCGC-UGGGGag----------CAGGAGC- -5'
21395 3' -57.6 NC_004812.1 + 3515 0.66 0.869808
Target:  5'- -cGGGGCcGGCGGCCCCgggggCGgggCCgCGg -3'
miRNA:   3'- ucUCUCGuUCGCUGGGGa----GCa--GGaGC- -5'
21395 3' -57.6 NC_004812.1 + 5516 0.67 0.830974
Target:  5'- cGGGGA--AGGCGuCCCCgcCGUCCUCc -3'
miRNA:   3'- -UCUCUcgUUCGCuGGGGa-GCAGGAGc -5'
21395 3' -57.6 NC_004812.1 + 7775 0.72 0.542207
Target:  5'- aGGuGAGCcccGCGcACCCCUCGcCCUCc -3'
miRNA:   3'- -UCuCUCGuu-CGC-UGGGGAGCaGGAGc -5'
21395 3' -57.6 NC_004812.1 + 8002 0.66 0.854855
Target:  5'- aGGGGGGCGcucccGCGACCCCggggggcgCGggccggCCUCc -3'
miRNA:   3'- -UCUCUCGUu----CGCUGGGGa-------GCa-----GGAGc -5'
21395 3' -57.6 NC_004812.1 + 8828 0.74 0.428395
Target:  5'- cGAGAGCcucggcagccucGGCGACCCCgCGUCCcgCGg -3'
miRNA:   3'- uCUCUCGu-----------UCGCUGGGGaGCAGGa-GC- -5'
21395 3' -57.6 NC_004812.1 + 9243 0.73 0.44792
Target:  5'- gGGAGAGCucgcggaaGGGCGacGCCCCUCcUUCUCGg -3'
miRNA:   3'- -UCUCUCG--------UUCGC--UGGGGAGcAGGAGC- -5'
21395 3' -57.6 NC_004812.1 + 10429 0.67 0.787771
Target:  5'- cGGAGAGC-AGCGACUCUgUGUCggCGa -3'
miRNA:   3'- -UCUCUCGuUCGCUGGGGaGCAGgaGC- -5'
21395 3' -57.6 NC_004812.1 + 11651 0.67 0.787771
Target:  5'- cGGGucGGgGAGCGGCgCCUCGgCCUCu -3'
miRNA:   3'- uCUC--UCgUUCGCUGgGGAGCaGGAGc -5'
21395 3' -57.6 NC_004812.1 + 14553 0.76 0.340338
Target:  5'- cGGGGGCGGGCucgucgcccggGGCCUgCUCGUCCUCGu -3'
miRNA:   3'- uCUCUCGUUCG-----------CUGGG-GAGCAGGAGC- -5'
21395 3' -57.6 NC_004812.1 + 14931 0.66 0.854086
Target:  5'- cGAaGGCGGGCGcgugcaugacgagGCCCaggucgUCGUCCUCGu -3'
miRNA:   3'- uCUcUCGUUCGC-------------UGGGg-----AGCAGGAGC- -5'
21395 3' -57.6 NC_004812.1 + 18115 0.66 0.854855
Target:  5'- uGGGAGU-AGCGGCCgCaCGUgCUCGg -3'
miRNA:   3'- uCUCUCGuUCGCUGGgGaGCAgGAGC- -5'
21395 3' -57.6 NC_004812.1 + 18465 0.67 0.796716
Target:  5'- gGGGGGGC--GCGGCCCCgCGcCCgCGg -3'
miRNA:   3'- -UCUCUCGuuCGCUGGGGaGCaGGaGC- -5'
21395 3' -57.6 NC_004812.1 + 19673 0.67 0.796716
Target:  5'- cGGGGGCcgcggggacgaGGGCGGCCCggUCGgCCUCGg -3'
miRNA:   3'- uCUCUCG-----------UUCGCUGGGg-AGCaGGAGC- -5'
21395 3' -57.6 NC_004812.1 + 20859 0.73 0.44792
Target:  5'- aGGGGGGCucGUGGCCCCUCccggacggCCUCGc -3'
miRNA:   3'- -UCUCUCGuuCGCUGGGGAGca------GGAGC- -5'
21395 3' -57.6 NC_004812.1 + 21666 0.78 0.246837
Target:  5'- aGGAGAGCcacGGCuggGACCCCUCGUCCg-- -3'
miRNA:   3'- -UCUCUCGu--UCG---CUGGGGAGCAGGagc -5'
21395 3' -57.6 NC_004812.1 + 22289 0.66 0.847082
Target:  5'- -cGGAGCGagGGUGACCCUcuggCGggggggCCUCGg -3'
miRNA:   3'- ucUCUCGU--UCGCUGGGGa---GCa-----GGAGC- -5'
21395 3' -57.6 NC_004812.1 + 22678 0.7 0.642154
Target:  5'- cGGGAGCcccGAGCgGACCCCgCGUCCc-- -3'
miRNA:   3'- uCUCUCG---UUCG-CUGGGGaGCAGGagc -5'
21395 3' -57.6 NC_004812.1 + 23604 0.67 0.814166
Target:  5'- cGGGGGuUggGCG-CCCCggUCGUCCgcgCGg -3'
miRNA:   3'- uCUCUC-GuuCGCuGGGG--AGCAGGa--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.