miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21395 3' -57.6 NC_004812.1 + 77739 0.69 0.721833
Target:  5'- cAGGGGGUggGGGCGGCCUC-CGcCCUCc -3'
miRNA:   3'- -UCUCUCG--UUCGCUGGGGaGCaGGAGc -5'
21395 3' -57.6 NC_004812.1 + 120986 0.7 0.652225
Target:  5'- --cGGGCGAGCGggcacACgCCC-CGUCCUCGc -3'
miRNA:   3'- ucuCUCGUUCGC-----UG-GGGaGCAGGAGC- -5'
21395 3' -57.6 NC_004812.1 + 145758 0.7 0.662282
Target:  5'- --cGGGCgGAGCGACCCgaCGUCCccaUCGg -3'
miRNA:   3'- ucuCUCG-UUCGCUGGGgaGCAGG---AGC- -5'
21395 3' -57.6 NC_004812.1 + 83856 0.69 0.671313
Target:  5'- gGGGGAGCGgcggggGGCGGCgcugccgCCC-CGUCCUCc -3'
miRNA:   3'- -UCUCUCGU------UCGCUG-------GGGaGCAGGAGc -5'
21395 3' -57.6 NC_004812.1 + 93332 0.69 0.692276
Target:  5'- aGGuGGGCgGGGCGACCCUaaaguucuucuUCGccUCCUCGa -3'
miRNA:   3'- -UCuCUCG-UUCGCUGGGG-----------AGC--AGGAGC- -5'
21395 3' -57.6 NC_004812.1 + 32225 0.69 0.702188
Target:  5'- -cAGcGCGAG-GAUCuCCUCGUCCUCGc -3'
miRNA:   3'- ucUCuCGUUCgCUGG-GGAGCAGGAGC- -5'
21395 3' -57.6 NC_004812.1 + 72355 0.69 0.721833
Target:  5'- gGGGGGGCGGGgGGuCUCCcgCGUCgUCGg -3'
miRNA:   3'- -UCUCUCGUUCgCU-GGGGa-GCAGgAGC- -5'
21395 3' -57.6 NC_004812.1 + 80929 0.69 0.721833
Target:  5'- cGGAGucgGGCGGGgGGCCguCCUCGUCCa-- -3'
miRNA:   3'- -UCUC---UCGUUCgCUGG--GGAGCAGGagc -5'
21395 3' -57.6 NC_004812.1 + 47585 0.69 0.721833
Target:  5'- cGGAGGGCGcucggggucgcGGCGACCCCgagCGcgCCgaCGg -3'
miRNA:   3'- -UCUCUCGU-----------UCGCUGGGGa--GCa-GGa-GC- -5'
21395 3' -57.6 NC_004812.1 + 67804 0.7 0.632074
Target:  5'- gGGGGGGCGGGCccggcaGCCCCcCGUCCgucCGa -3'
miRNA:   3'- -UCUCUCGUUCGc-----UGGGGaGCAGGa--GC- -5'
21395 3' -57.6 NC_004812.1 + 90645 0.7 0.621994
Target:  5'- uGAcGAGCGAGCG-CgCCagGUCCUCGu -3'
miRNA:   3'- uCU-CUCGUUCGCuGgGGagCAGGAGC- -5'
21395 3' -57.6 NC_004812.1 + 90973 0.71 0.611922
Target:  5'- -aGGGGCuccaccggcucGAGCGACgCCUCGUCgUCGu -3'
miRNA:   3'- ucUCUCG-----------UUCGCUGgGGAGCAGgAGC- -5'
21395 3' -57.6 NC_004812.1 + 145678 0.73 0.46609
Target:  5'- --cGAGCcgauaucGCGACCCCUCGUCCccCGa -3'
miRNA:   3'- ucuCUCGuu-----CGCUGGGGAGCAGGa-GC- -5'
21395 3' -57.6 NC_004812.1 + 126959 0.73 0.475317
Target:  5'- cGAGGGCcgggcacggcGGCGACgCCggCGUCCUCGg -3'
miRNA:   3'- uCUCUCGu---------UCGCUGgGGa-GCAGGAGC- -5'
21395 3' -57.6 NC_004812.1 + 97539 0.72 0.542207
Target:  5'- gGGGGGGUucGUGA-CCUUCGUCCUCu -3'
miRNA:   3'- -UCUCUCGuuCGCUgGGGAGCAGGAGc -5'
21395 3' -57.6 NC_004812.1 + 117966 0.72 0.542207
Target:  5'- gGGGGAgGCGGGCG-CCCC-CGgCCUCGc -3'
miRNA:   3'- -UCUCU-CGUUCGCuGGGGaGCaGGAGC- -5'
21395 3' -57.6 NC_004812.1 + 133283 0.72 0.542207
Target:  5'- aGGuGAGCcccGCGcACCCCUCGcCCUCc -3'
miRNA:   3'- -UCuCUCGuu-CGC-UGGGGAGCaGGAGc -5'
21395 3' -57.6 NC_004812.1 + 127572 0.71 0.557961
Target:  5'- gGGGGAGgGGGCGcGCCCCccgcgucuaccaGUCCUCGg -3'
miRNA:   3'- -UCUCUCgUUCGC-UGGGGag----------CAGGAGC- -5'
21395 3' -57.6 NC_004812.1 + 138426 0.71 0.601865
Target:  5'- cGGGGGGCugccGGCG-CCCCaUCGcCCUCa -3'
miRNA:   3'- -UCUCUCGu---UCGCuGGGG-AGCaGGAGc -5'
21395 3' -57.6 NC_004812.1 + 45821 0.71 0.611922
Target:  5'- cGGGAGCccgacGAGCGGCUCC-CGgaaccUCCUCGg -3'
miRNA:   3'- uCUCUCG-----UUCGCUGGGGaGC-----AGGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.