miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21397 5' -57.5 NC_004812.1 + 2000 0.67 0.788244
Target:  5'- gGUCCcgccggcGGUCGCuCgGGGCGCcGACGCc -3'
miRNA:   3'- -UAGGa------CCAGUGcGaCCUGCGaCUGCG- -5'
21397 5' -57.5 NC_004812.1 + 12130 0.7 0.621195
Target:  5'- cGUCCcguUGGUCACGUUcccGCGCUGGgGCg -3'
miRNA:   3'- -UAGG---ACCAGUGCGAcc-UGCGACUgCG- -5'
21397 5' -57.5 NC_004812.1 + 12177 0.7 0.604963
Target:  5'- cGUCCgGGUCACGgaGGGCcgacaguauaugcucGCUGAUGa -3'
miRNA:   3'- -UAGGaCCAGUGCgaCCUG---------------CGACUGCg -5'
21397 5' -57.5 NC_004812.1 + 14365 0.67 0.814815
Target:  5'- -gCC-GGcCGCGC-GGGCGCggcGGCGCa -3'
miRNA:   3'- uaGGaCCaGUGCGaCCUGCGa--CUGCG- -5'
21397 5' -57.5 NC_004812.1 + 15935 0.66 0.823356
Target:  5'- gGUCgCggGGUCACGCguagacguagGcGGCGCgUGGCGCc -3'
miRNA:   3'- -UAG-Ga-CCAGUGCGa---------C-CUGCG-ACUGCG- -5'
21397 5' -57.5 NC_004812.1 + 17630 0.66 0.821661
Target:  5'- uGUCCUGGUgGuCGUcGGACGCgcccaagacccaGACGUc -3'
miRNA:   3'- -UAGGACCAgU-GCGaCCUGCGa-----------CUGCG- -5'
21397 5' -57.5 NC_004812.1 + 19790 0.66 0.847921
Target:  5'- cGUCCUcGUCccCGCUGGGCggcuccucGCUGcuGCGCa -3'
miRNA:   3'- -UAGGAcCAGu-GCGACCUG--------CGAC--UGCG- -5'
21397 5' -57.5 NC_004812.1 + 20392 0.69 0.71195
Target:  5'- uGUUgUGGUCACGgUGauGACGCUGcuggaucgacACGCg -3'
miRNA:   3'- -UAGgACCAGUGCgAC--CUGCGAC----------UGCG- -5'
21397 5' -57.5 NC_004812.1 + 21127 0.67 0.797251
Target:  5'- -gCCUGGgccugcagcgaCACGUUGGuguCGCcGGCGCg -3'
miRNA:   3'- uaGGACCa----------GUGCGACCu--GCGaCUGCG- -5'
21397 5' -57.5 NC_004812.1 + 21175 0.69 0.702018
Target:  5'- ----aGGagGCGCUGGGCGCggagGGCGUc -3'
miRNA:   3'- uaggaCCagUGCGACCUGCGa---CUGCG- -5'
21397 5' -57.5 NC_004812.1 + 28133 0.69 0.702018
Target:  5'- -cCCgacGUCucgGCGCUGGGCGCgcagGGCGUg -3'
miRNA:   3'- uaGGac-CAG---UGCGACCUGCGa---CUGCG- -5'
21397 5' -57.5 NC_004812.1 + 28682 0.74 0.402112
Target:  5'- -gCCUGcG-CGCGCUGGGgGCUGGcCGCg -3'
miRNA:   3'- uaGGAC-CaGUGCGACCUgCGACU-GCG- -5'
21397 5' -57.5 NC_004812.1 + 28725 0.67 0.788244
Target:  5'- -aCCUGG---CGCUGGAcCGC-GACGCc -3'
miRNA:   3'- uaGGACCaguGCGACCU-GCGaCUGCG- -5'
21397 5' -57.5 NC_004812.1 + 28835 0.67 0.779099
Target:  5'- cUCgUGcugCGCGC-GGACGCcGACGCg -3'
miRNA:   3'- uAGgACca-GUGCGaCCUGCGaCUGCG- -5'
21397 5' -57.5 NC_004812.1 + 28889 0.68 0.760428
Target:  5'- uUCCUGGcCcccgaGCUGGuccGCGCcgUGGCGCg -3'
miRNA:   3'- uAGGACCaGug---CGACC---UGCG--ACUGCG- -5'
21397 5' -57.5 NC_004812.1 + 30630 0.67 0.806111
Target:  5'- --aCgGGcCGCGC-GGACGCggGGCGCg -3'
miRNA:   3'- uagGaCCaGUGCGaCCUGCGa-CUGCG- -5'
21397 5' -57.5 NC_004812.1 + 35531 0.67 0.814815
Target:  5'- cGUCagcaUGG-CGCGCgggGGGCGCgGGCGg -3'
miRNA:   3'- -UAGg---ACCaGUGCGa--CCUGCGaCUGCg -5'
21397 5' -57.5 NC_004812.1 + 42497 0.67 0.788244
Target:  5'- uUCCgcgaCGCGCUGG-CGCUcGGCGCc -3'
miRNA:   3'- uAGGaccaGUGCGACCuGCGA-CUGCG- -5'
21397 5' -57.5 NC_004812.1 + 46428 0.76 0.337939
Target:  5'- gGUCCaGG-CGCucccCUGGGCGCUGGCGCu -3'
miRNA:   3'- -UAGGaCCaGUGc---GACCUGCGACUGCG- -5'
21397 5' -57.5 NC_004812.1 + 46629 0.66 0.823356
Target:  5'- cGUCCgGGUCgACGC-GGGCGCccgGAaacaGCa -3'
miRNA:   3'- -UAGGaCCAG-UGCGaCCUGCGa--CUg---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.