miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21397 5' -57.5 NC_004812.1 + 21175 0.69 0.702018
Target:  5'- ----aGGagGCGCUGGGCGCggagGGCGUc -3'
miRNA:   3'- uaggaCCagUGCGACCUGCGa---CUGCG- -5'
21397 5' -57.5 NC_004812.1 + 85132 0.7 0.651661
Target:  5'- -aCCgGGgCGCGCgggcggGGGCGCgccugGACGCg -3'
miRNA:   3'- uaGGaCCaGUGCGa-----CCUGCGa----CUGCG- -5'
21397 5' -57.5 NC_004812.1 + 105193 0.7 0.651661
Target:  5'- -gCCUGcgaGCGCgGGGCGCgGGCGCg -3'
miRNA:   3'- uaGGACcagUGCGaCCUGCGaCUGCG- -5'
21397 5' -57.5 NC_004812.1 + 48262 0.69 0.661796
Target:  5'- -aCCgGGUCACGg-GGGCGCUGGagGCc -3'
miRNA:   3'- uaGGaCCAGUGCgaCCUGCGACUg-CG- -5'
21397 5' -57.5 NC_004812.1 + 140596 0.69 0.681988
Target:  5'- -cCCUGGcCGCcaUGGGCGCcGGCGCc -3'
miRNA:   3'- uaGGACCaGUGcgACCUGCGaCUGCG- -5'
21397 5' -57.5 NC_004812.1 + 73113 0.69 0.681988
Target:  5'- gGUCCauaacGGUCACGCgGGcCGCgggauccGGCGCg -3'
miRNA:   3'- -UAGGa----CCAGUGCGaCCuGCGa------CUGCG- -5'
21397 5' -57.5 NC_004812.1 + 135788 0.69 0.682994
Target:  5'- ----cGGUCACGCggauggugacgaggcGGGCGCcGACGCg -3'
miRNA:   3'- uaggaCCAGUGCGa--------------CCUGCGaCUGCG- -5'
21397 5' -57.5 NC_004812.1 + 94745 0.69 0.692028
Target:  5'- uUUCUGGUCGcCGC-GG-CGCUGGcCGCc -3'
miRNA:   3'- uAGGACCAGU-GCGaCCuGCGACU-GCG- -5'
21397 5' -57.5 NC_004812.1 + 94116 0.69 0.701021
Target:  5'- -cCCUGGUgcggggccucgcgCACGuCUGGACGCaGGcCGCc -3'
miRNA:   3'- uaGGACCA-------------GUGC-GACCUGCGaCU-GCG- -5'
21397 5' -57.5 NC_004812.1 + 145933 0.7 0.631352
Target:  5'- -aCCUGGUgACGUgguUGG-CGCUG-CGCu -3'
miRNA:   3'- uaGGACCAgUGCG---ACCuGCGACuGCG- -5'
21397 5' -57.5 NC_004812.1 + 110201 0.7 0.631352
Target:  5'- -aCCUGGaCGCGCUGcacgaGACGCcGACGg -3'
miRNA:   3'- uaGGACCaGUGCGAC-----CUGCGaCUGCg -5'
21397 5' -57.5 NC_004812.1 + 81202 0.7 0.631352
Target:  5'- -gCCUGGaCGCGC-GGGCGUgGAUGCc -3'
miRNA:   3'- uaGGACCaGUGCGaCCUGCGaCUGCG- -5'
21397 5' -57.5 NC_004812.1 + 137224 0.75 0.361107
Target:  5'- cGUCCUGGcCcUGCUGGACGUccGCGCg -3'
miRNA:   3'- -UAGGACCaGuGCGACCUGCGacUGCG- -5'
21397 5' -57.5 NC_004812.1 + 154190 0.74 0.402112
Target:  5'- -gCCUGcG-CGCGCUGGGgGCUGGcCGCg -3'
miRNA:   3'- uaGGAC-CaGUGCGACCUgCGACU-GCG- -5'
21397 5' -57.5 NC_004812.1 + 94836 0.74 0.408084
Target:  5'- cGUCCUGGggCACGCcgccgccggacUgacggagcugugucGGGCGCUGACGCc -3'
miRNA:   3'- -UAGGACCa-GUGCG-----------A--------------CCUGCGACUGCG- -5'
21397 5' -57.5 NC_004812.1 + 65088 0.73 0.455039
Target:  5'- -cCCUGGcCGCGCgccccgcggagGaGugGCUGGCGCg -3'
miRNA:   3'- uaGGACCaGUGCGa----------C-CugCGACUGCG- -5'
21397 5' -57.5 NC_004812.1 + 113394 0.73 0.482877
Target:  5'- cUCCUGGgagACGCUGG-CGCUGcACGg -3'
miRNA:   3'- uAGGACCag-UGCGACCuGCGAC-UGCg -5'
21397 5' -57.5 NC_004812.1 + 138619 0.72 0.500925
Target:  5'- gAUCCUGGUgggcgacaggcucCACGUcGGGCGCcUGACGg -3'
miRNA:   3'- -UAGGACCA-------------GUGCGaCCUGCG-ACUGCg -5'
21397 5' -57.5 NC_004812.1 + 12177 0.7 0.604963
Target:  5'- cGUCCgGGUCACGgaGGGCcgacaguauaugcucGCUGAUGa -3'
miRNA:   3'- -UAGGaCCAGUGCgaCCUG---------------CGACUGCg -5'
21397 5' -57.5 NC_004812.1 + 123623 0.7 0.611046
Target:  5'- ----aGGUC-CGCUGGAgGCagGACGCg -3'
miRNA:   3'- uaggaCCAGuGCGACCUgCGa-CUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.