miRNA display CGI


Results 21 - 40 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21400 3' -61.3 NC_004812.1 + 3967 0.75 0.248216
Target:  5'- cGGGCACGGcgGCCaGGUCGcCGccgagcccUCGGCCa -3'
miRNA:   3'- aCUCGUGCC--CGG-CCAGCaGC--------AGCCGG- -5'
21400 3' -61.3 NC_004812.1 + 4119 0.67 0.657378
Target:  5'- -cGGCGCcGGCgGGgcccUCGUCGgagagggCGGCCg -3'
miRNA:   3'- acUCGUGcCCGgCC----AGCAGCa------GCCGG- -5'
21400 3' -61.3 NC_004812.1 + 4629 0.69 0.532048
Target:  5'- cGGGCgcccacACGGGCgCGGgcgCGcCGgCGGCCu -3'
miRNA:   3'- aCUCG------UGCCCG-GCCa--GCaGCaGCCGG- -5'
21400 3' -61.3 NC_004812.1 + 4653 0.68 0.628198
Target:  5'- --cGCGCGGggaggggcucGCCGGcCGUCG-CGcGCCg -3'
miRNA:   3'- acuCGUGCC----------CGGCCaGCAGCaGC-CGG- -5'
21400 3' -61.3 NC_004812.1 + 4802 0.71 0.433134
Target:  5'- aGGGCugguGCGGGCgCGGg-GUCGgcacgCGGCCc -3'
miRNA:   3'- aCUCG----UGCCCG-GCCagCAGCa----GCCGG- -5'
21400 3' -61.3 NC_004812.1 + 4845 0.67 0.686393
Target:  5'- gGGGCACGGcCCGcGgCGgCG-CGGCCg -3'
miRNA:   3'- aCUCGUGCCcGGC-CaGCaGCaGCCGG- -5'
21400 3' -61.3 NC_004812.1 + 5133 0.68 0.628198
Target:  5'- gGGGCcgccCGGGgaCGG-CGgCGUCGGCCc -3'
miRNA:   3'- aCUCGu---GCCCg-GCCaGCaGCAGCCGG- -5'
21400 3' -61.3 NC_004812.1 + 5220 0.67 0.637932
Target:  5'- cGAgGC-CGaGCCGG-CGUCGgccucgCGGCCg -3'
miRNA:   3'- aCU-CGuGCcCGGCCaGCAGCa-----GCCGG- -5'
21400 3' -61.3 NC_004812.1 + 5392 0.82 0.096669
Target:  5'- -cGGCGCgGGGCCGGgggCGUCGcCGGCCc -3'
miRNA:   3'- acUCGUG-CCCGGCCa--GCAGCaGCCGG- -5'
21400 3' -61.3 NC_004812.1 + 5637 0.67 0.647661
Target:  5'- gGGGC-CGGGcCCGGg-GUCGcCGGgCg -3'
miRNA:   3'- aCUCGuGCCC-GGCCagCAGCaGCCgG- -5'
21400 3' -61.3 NC_004812.1 + 5678 0.69 0.560501
Target:  5'- gGGGCACgggGGGCCGGggGUC-UCccagGGCCa -3'
miRNA:   3'- aCUCGUG---CCCGGCCagCAGcAG----CCGG- -5'
21400 3' -61.3 NC_004812.1 + 5828 0.68 0.599042
Target:  5'- cGGGCucuGCGGGCCGG-CGgcgCGcUCGGg- -3'
miRNA:   3'- aCUCG---UGCCCGGCCaGCa--GC-AGCCgg -5'
21400 3' -61.3 NC_004812.1 + 5871 0.76 0.23167
Target:  5'- aUGGGCGCGGGCCGGggggCG-CGggcgCGGgCu -3'
miRNA:   3'- -ACUCGUGCCCGGCCa---GCaGCa---GCCgG- -5'
21400 3' -61.3 NC_004812.1 + 7665 0.7 0.504131
Target:  5'- cGGGCccGCGGGCCGGgagCGgggGUgGGCg -3'
miRNA:   3'- aCUCG--UGCCCGGCCa--GCag-CAgCCGg -5'
21400 3' -61.3 NC_004812.1 + 7852 0.76 0.226365
Target:  5'- gGGGCGgGGGUCGGUCGUag-CGGCg -3'
miRNA:   3'- aCUCGUgCCCGGCCAGCAgcaGCCGg -5'
21400 3' -61.3 NC_004812.1 + 8026 0.75 0.271784
Target:  5'- gGGGCGCGGGCCGGcCucCGcCGGCa -3'
miRNA:   3'- aCUCGUGCCCGGCCaGcaGCaGCCGg -5'
21400 3' -61.3 NC_004812.1 + 8182 0.71 0.42467
Target:  5'- aUGGGUcCGGGCCGGg-GUC--CGGCCg -3'
miRNA:   3'- -ACUCGuGCCCGGCCagCAGcaGCCGG- -5'
21400 3' -61.3 NC_004812.1 + 8313 0.68 0.628198
Target:  5'- cGAGCgcagcaGCGGGCCGG-CGcCG-CcGCCg -3'
miRNA:   3'- aCUCG------UGCCCGGCCaGCaGCaGcCGG- -5'
21400 3' -61.3 NC_004812.1 + 8350 0.71 0.433134
Target:  5'- cGGGCGCGG-CCGccccaccgCGUCGgCGGCCg -3'
miRNA:   3'- aCUCGUGCCcGGCca------GCAGCaGCCGG- -5'
21400 3' -61.3 NC_004812.1 + 9073 0.68 0.589359
Target:  5'- gGAGUguuucuGCGGcuccGUCGGUCGuuUCGcCGGCCg -3'
miRNA:   3'- aCUCG------UGCC----CGGCCAGC--AGCaGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.