miRNA display CGI


Results 1 - 20 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21400 3' -61.3 NC_004812.1 + 48 0.67 0.686393
Target:  5'- cGGGcCGCGGGCgCGG-CGgCG-CGGCg -3'
miRNA:   3'- aCUC-GUGCCCG-GCCaGCaGCaGCCGg -5'
21400 3' -61.3 NC_004812.1 + 93 0.69 0.570083
Target:  5'- aGGG-ACGGGCCGGggcgCGcgCGg-GGCCg -3'
miRNA:   3'- aCUCgUGCCCGGCCa---GCa-GCagCCGG- -5'
21400 3' -61.3 NC_004812.1 + 314 0.66 0.743113
Target:  5'- aGAGCGCGGGCaaccaGcaCGUCGggaGGUg -3'
miRNA:   3'- aCUCGUGCCCGg----CcaGCAGCag-CCGg -5'
21400 3' -61.3 NC_004812.1 + 687 0.68 0.607776
Target:  5'- gGAGCGCguccccGGGuCCGGagcuccgUCGgCGUCGGCg -3'
miRNA:   3'- aCUCGUG------CCC-GGCC-------AGCaGCAGCCGg -5'
21400 3' -61.3 NC_004812.1 + 1458 0.74 0.303062
Target:  5'- cGGGCACGGcggcgacGCCGG-CGUCcUCGGCg -3'
miRNA:   3'- aCUCGUGCC-------CGGCCaGCAGcAGCCGg -5'
21400 3' -61.3 NC_004812.1 + 2142 0.67 0.647661
Target:  5'- gGAGgcccCGCGGGCgGGgcUCG-CGgcggCGGCCa -3'
miRNA:   3'- aCUC----GUGCCCGgCC--AGCaGCa---GCCGG- -5'
21400 3' -61.3 NC_004812.1 + 2183 0.7 0.485876
Target:  5'- -cGGCgGCGGcGUC-GUCGUCGUCGGCg -3'
miRNA:   3'- acUCG-UGCC-CGGcCAGCAGCAGCCGg -5'
21400 3' -61.3 NC_004812.1 + 2247 0.66 0.733833
Target:  5'- -cGGCGCGGcGgCGGggucCG-CGUCGGCg -3'
miRNA:   3'- acUCGUGCC-CgGCCa---GCaGCAGCCGg -5'
21400 3' -61.3 NC_004812.1 + 2341 0.69 0.570083
Target:  5'- cGcAGCGCGGGCggcaGGgCGUCGggccCGGCg -3'
miRNA:   3'- aC-UCGUGCCCGg---CCaGCAGCa---GCCGg -5'
21400 3' -61.3 NC_004812.1 + 2495 0.67 0.676752
Target:  5'- -cGGCcucGCGGGCgGGcgaGUCGgcggcgCGGCCg -3'
miRNA:   3'- acUCG---UGCCCGgCCag-CAGCa-----GCCGG- -5'
21400 3' -61.3 NC_004812.1 + 2531 0.68 0.599042
Target:  5'- cGAGCGCGGGCagcacggcgcggCGGUacUCGcgCGGCg -3'
miRNA:   3'- aCUCGUGCCCG------------GCCAgcAGCa-GCCGg -5'
21400 3' -61.3 NC_004812.1 + 2568 0.66 0.724472
Target:  5'- -cGGCAgGGGCaCGGgCGU-GUCgGGCCc -3'
miRNA:   3'- acUCGUgCCCG-GCCaGCAgCAG-CCGG- -5'
21400 3' -61.3 NC_004812.1 + 2732 0.66 0.743113
Target:  5'- -cGGCGCGGcGCaGGUCGcgCG-CGGCg -3'
miRNA:   3'- acUCGUGCC-CGgCCAGCa-GCaGCCGg -5'
21400 3' -61.3 NC_004812.1 + 2815 0.66 0.733833
Target:  5'- cGGcGCGCGacGGCgGGccCGUCGgcCGGCCa -3'
miRNA:   3'- aCU-CGUGC--CCGgCCa-GCAGCa-GCCGG- -5'
21400 3' -61.3 NC_004812.1 + 2957 0.68 0.607776
Target:  5'- gGAGCACGcccugcgcgcccaGcGCCGaGaCGUCGggCGGCCg -3'
miRNA:   3'- aCUCGUGC-------------C-CGGC-CaGCAGCa-GCCGG- -5'
21400 3' -61.3 NC_004812.1 + 3221 0.66 0.705545
Target:  5'- cGAgGCGCGcGGCgGGcCGaaggCG-CGGCCg -3'
miRNA:   3'- aCU-CGUGC-CCGgCCaGCa---GCaGCCGG- -5'
21400 3' -61.3 NC_004812.1 + 3463 0.67 0.676752
Target:  5'- cGGGCccgGCGGG-CGGUCGcgcCGUCagcgcggcgGGCCg -3'
miRNA:   3'- aCUCG---UGCCCgGCCAGCa--GCAG---------CCGG- -5'
21400 3' -61.3 NC_004812.1 + 3503 0.73 0.317292
Target:  5'- cGGGCGCGGGcCCGGg-GcCGgCGGCCc -3'
miRNA:   3'- aCUCGUGCCC-GGCCagCaGCaGCCGG- -5'
21400 3' -61.3 NC_004812.1 + 3639 0.71 0.408042
Target:  5'- gGGcGCGCGGcGCCGcccgCGUcugCGUCGGCCa -3'
miRNA:   3'- aCU-CGUGCC-CGGCca--GCA---GCAGCCGG- -5'
21400 3' -61.3 NC_004812.1 + 3898 0.68 0.579704
Target:  5'- aGAgGCGCGGGCgCGG-CGgcgCGgCGGCg -3'
miRNA:   3'- aCU-CGUGCCCG-GCCaGCa--GCaGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.