miRNA display CGI


Results 1 - 20 of 414 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21400 3' -61.3 NC_004812.1 + 16763 0.66 0.715041
Target:  5'- gGGGcCGCGGGCCcgaagacgCGUgGggCGGCCg -3'
miRNA:   3'- aCUC-GUGCCCGGcca-----GCAgCa-GCCGG- -5'
21400 3' -61.3 NC_004812.1 + 83980 0.66 0.695993
Target:  5'- gGGGCGuCGcGGCCcggcccuccuugGGgggCGUCG-CGGCCc -3'
miRNA:   3'- aCUCGU-GC-CCGG------------CCa--GCAGCaGCCGG- -5'
21400 3' -61.3 NC_004812.1 + 99572 0.66 0.705545
Target:  5'- -aGGCugGGGUCGca-GUCGgUCGGCg -3'
miRNA:   3'- acUCGugCCCGGCcagCAGC-AGCCGg -5'
21400 3' -61.3 NC_004812.1 + 45556 0.66 0.705545
Target:  5'- --uGCGCGGGuggucCCGGUaccacgaGUCGGCCu -3'
miRNA:   3'- acuCGUGCCC-----GGCCAgcag---CAGCCGG- -5'
21400 3' -61.3 NC_004812.1 + 94650 0.66 0.695993
Target:  5'- aGGGCGCGGGCgCGaGcUCGggaaCGaCGGCg -3'
miRNA:   3'- aCUCGUGCCCG-GC-C-AGCa---GCaGCCGg -5'
21400 3' -61.3 NC_004812.1 + 153784 0.66 0.695993
Target:  5'- gGAGUggccggccgACGGGCCcGcCGUCG-CGcGCCg -3'
miRNA:   3'- aCUCG---------UGCCCGGcCaGCAGCaGC-CGG- -5'
21400 3' -61.3 NC_004812.1 + 116145 0.66 0.705545
Target:  5'- cGAGgGCGGGCCacagGGcCG-CGgcgCGGCa -3'
miRNA:   3'- aCUCgUGCCCGG----CCaGCaGCa--GCCGg -5'
21400 3' -61.3 NC_004812.1 + 99286 0.66 0.695993
Target:  5'- gGGGUccaGGcGCCGGcagaccugCG-CGUCGGCCg -3'
miRNA:   3'- aCUCGug-CC-CGGCCa-------GCaGCAGCCGG- -5'
21400 3' -61.3 NC_004812.1 + 119245 0.66 0.715041
Target:  5'- aGGGCccgcucccCGGGCCcgcGGUCGUCccggCGGUCc -3'
miRNA:   3'- aCUCGu-------GCCCGG---CCAGCAGca--GCCGG- -5'
21400 3' -61.3 NC_004812.1 + 67251 0.66 0.70173
Target:  5'- uUGAGCACGGucGCCaGGagGggcccgagcuccgCGUCgGGCCg -3'
miRNA:   3'- -ACUCGUGCC--CGG-CCagCa------------GCAG-CCGG- -5'
21400 3' -61.3 NC_004812.1 + 121027 0.66 0.723532
Target:  5'- gGGGCGCuccccucGGcGCCGG-CGcgCGaCGGCCg -3'
miRNA:   3'- aCUCGUG-------CC-CGGCCaGCa-GCaGCCGG- -5'
21400 3' -61.3 NC_004812.1 + 135409 0.66 0.705545
Target:  5'- --cGCACGcuCCGG-CGUCGcuuccUCGGCCa -3'
miRNA:   3'- acuCGUGCccGGCCaGCAGC-----AGCCGG- -5'
21400 3' -61.3 NC_004812.1 + 94392 0.66 0.715041
Target:  5'- cGGcGUACGcGGCggCGGUgG-CGUUGGCCg -3'
miRNA:   3'- aCU-CGUGC-CCG--GCCAgCaGCAGCCGG- -5'
21400 3' -61.3 NC_004812.1 + 32481 0.66 0.695993
Target:  5'- gUGAgGCGCGGcccGUCGGcggcguaccgCGUUGUCGGCg -3'
miRNA:   3'- -ACU-CGUGCC---CGGCCa---------GCAGCAGCCGg -5'
21400 3' -61.3 NC_004812.1 + 93090 0.66 0.718821
Target:  5'- gGAGCuCGGGCCcagcgggcgcuucgcGGU-GUCGggCGGCg -3'
miRNA:   3'- aCUCGuGCCCGG---------------CCAgCAGCa-GCCGg -5'
21400 3' -61.3 NC_004812.1 + 117494 0.66 0.705545
Target:  5'- cGGGCgcguccgacGCGGGCCcccGGcCGcUC-UCGGCCg -3'
miRNA:   3'- aCUCG---------UGCCCGG---CCaGC-AGcAGCCGG- -5'
21400 3' -61.3 NC_004812.1 + 71758 0.66 0.715041
Target:  5'- cGGGU-UGGGCCGGUCGcugCGacaGGCg -3'
miRNA:   3'- aCUCGuGCCCGGCCAGCa--GCag-CCGg -5'
21400 3' -61.3 NC_004812.1 + 155454 0.66 0.720708
Target:  5'- gGAGCgGgGGGCCGGgcucgCGcCGccggggagccuggCGGCCg -3'
miRNA:   3'- aCUCG-UgCCCGGCCa----GCaGCa------------GCCGG- -5'
21400 3' -61.3 NC_004812.1 + 139347 0.66 0.743113
Target:  5'- cGAagGCGGaGgCGGUCG-CGUgGGCCc -3'
miRNA:   3'- aCUcgUGCC-CgGCCAGCaGCAgCCGG- -5'
21400 3' -61.3 NC_004812.1 + 102893 0.66 0.705545
Target:  5'- cGuGCGCGGGgCGG-CGgaccggcgccUCGggggggCGGCCg -3'
miRNA:   3'- aCuCGUGCCCgGCCaGC----------AGCa-----GCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.